Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.9e-60 236.1 162 100.0
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 1.5e-41 173.3 168 76.2
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 3.6e-19 99.0 74 75.7
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 6.1e-19 98.2 166 60.8
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 3.4e-17 92.4 72 73.6
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.8e-16 89.4 73 67.1
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.8e-16 89.4 73 67.1
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.7e-16 89.0 73 71.2
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 3.7e-16 89.0 68 70.6
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 8.3e-16 87.8 162 56.2
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 2.4e-15 86.3 158 53.8
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.1e-15 85.9 166 60.8
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 5.4e-15 85.1 75 64.0
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 9.1e-15 84.3 58 74.1
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 1.2e-14 84.0 70 65.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.0e-13 80.9 68 66.2
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.8e-13 79.0 156 48.7
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 1.5e-12 77.0 72 59.7
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 1.9e-12 76.6 51 76.5
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 1.9e-12 76.6 71 62.0
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 4.2e-12 75.5 157 53.5
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 5.5e-12 75.1 74 56.8
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 9.5e-12 74.3 68 63.2
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 9.5e-12 74.3 56 67.9
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.2e-11 73.9 63 63.5
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.1e-11 73.2 51 74.5
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 2.1e-11 73.2 71 57.7
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 2.1e-11 73.2 55 69.1
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.1e-11 73.2 71 62.0
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 2.7e-11 72.8 141 53.9
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 2.7e-11 72.8 190 35.8
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.7e-11 72.8 62 59.7
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 4.7e-11 72.0 70 57.1
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 6.1e-11 71.6 168 57.1
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 6.1e-11 71.6 169 49.7
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 1.0e-10 70.9 71 54.9
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.4e-10 70.5 71 57.7
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.4e-10 70.5 66 60.6
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.8e-10 70.1 67 55.2
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 2.3e-10 69.7 68 57.4
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.3e-10 69.7 70 52.9
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 3.0e-10 69.3 53 66.0
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.0e-10 69.3 62 58.1
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.0e-10 69.3 68 52.9
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 4.0e-10 68.9 141 45.4
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 4.0e-10 68.9 161 50.9
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 6.8e-10 68.2 58 63.8
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 6.8e-10 68.2 46 67.4
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 8.8e-10 67.8 53 69.8
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 8.8e-10 67.8 59 62.7
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 8.8e-10 67.8 66 50.0
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 8.8e-10 67.8 52 71.2
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.2e-09 67.4 59 62.7
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 157 36.3
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 166 48.8
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.5e-09 67.0 162 40.1
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 2.0e-09 66.6 54 66.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 2.0e-09 66.6 54 66.7
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 2.0e-09 66.6 157 38.2
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 2.0e-09 66.6 71 50.7
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 2.0e-09 66.6 65 56.9
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.6e-09 66.2 55 60.0
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 2.6e-09 66.2 65 58.5
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 3.4e-09 65.9 48 66.7
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 3.4e-09 65.9 69 49.3
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 4.4e-09 65.5 62 58.1
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.4e-09 65.5 166 47.6
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.4e-09 65.5 168 39.3
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 4.4e-09 65.5 52 69.2
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 5.7e-09 65.1 172 37.8
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 5.7e-09 65.1 157 40.1
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.5e-09 64.7 73 57.5
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 7.5e-09 64.7 172 37.8
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 7.5e-09 64.7 52 65.4
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 7.5e-09 64.7 68 57.4
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 7.5e-09 64.7 71 49.3
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 9.8e-09 64.3 159 47.8
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 9.8e-09 64.3 159 47.8
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 9.8e-09 64.3 159 47.8
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 9.8e-09 64.3 62 56.5
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 9.8e-09 64.3 73 57.5
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 1.3e-08 63.9 62 56.5
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 1.3e-08 63.9 70 55.7
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.7e-08 63.5 51 64.7
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.7e-08 63.5 138 39.9
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.7e-08 63.5 154 48.7
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 2.2e-08 63.2 64 53.1
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.2e-08 63.2 59 55.9
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 3.7e-08 62.4 71 54.9
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 3.7e-08 62.4 56 58.9
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 3.7e-08 62.4 50 58.0
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 4.9e-08 62.0 53 56.6
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 6.3e-08 61.6 157 42.7
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 6.3e-08 61.6 58 56.9
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 8.3e-08 61.2 51 62.7
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 8.3e-08 61.2 64 54.7
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 8.3e-08 61.2 54 57.4
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 1.1e-07 60.8 69 50.7
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.1e-07 60.8 71 49.3
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 1.1e-07 60.8 57 54.4
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 1.4e-07 60.5 152 48.7
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.4e-07 60.5 40 75.0
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 1.8e-07 60.1 70 45.7
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 1.8e-07 60.1 58 51.7
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 1.8e-07 60.1 55 54.5
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.8e-07 60.1 57 57.9
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 2.4e-07 59.7 64 53.1
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 3.1e-07 59.3 162 36.4
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 3.1e-07 59.3 58 53.4
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 3.1e-07 59.3 67 52.2
AT2G28440 Arabidopsis thaliana HOM05D011190 ORTHO05D013686 4.1e-07 58.9 65 50.8
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 4.1e-07 58.9 155 34.2
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 5.4e-07 58.5 65 50.8
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 5.4e-07 58.5 60 51.7
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.4e-07 58.5 58 56.9
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 7.0e-07 58.2 63 49.2
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 7.0e-07 58.2 49 67.3
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 9.2e-07 57.8 151 45.0
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 1.6e-06 57.0 71 46.5
Aqoxy1G01243 Aquilegia oxysepala HOM05D004188 ORTHO05D004445 2.0e-06 56.6 50 62.0
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 2.0e-06 56.6 69 49.3
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 2.0e-06 56.6 69 49.3
BraA07t29606Z Brassica rapa HOM05D011190 ORTHO05D013686 2.7e-06 56.2 50 56.0
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 2.7e-06 56.2 71 46.5
A04p21570 Brassica napus HOM05D011190 ORTHO05D013686 3.5e-06 55.8 50 54.0
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.5e-06 55.8 154 46.1
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 4.5e-06 55.5 50 50.0
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 4.5e-06 55.5 48 56.2
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 5.9e-06 55.1 60 51.7
BolC4t27286H Brassica oleracea HOM05D011190 ORTHO05D013686 5.9e-06 55.1 50 54.0
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 5.9e-06 55.1 138 42.8
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 7.7e-06 54.7 179 40.8
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 7.7e-06 54.7 64 48.4
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 7.7e-06 54.7 64 48.4
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 7.7e-06 54.7 45 62.2


User provided reference genes

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