Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 5.6e-245 850.5 428 100.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 6.4e-225 783.9 430 90.7
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.3e-221 771.2 419 92.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.2e-202 709.9 431 82.4
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.2e-202 709.9 429 83.4
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 7.1e-200 700.7 430 82.6
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.8e-195 686.0 384 89.6
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 5.3e-195 684.5 425 80.7
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.4e-194 681.8 437 78.5
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.7e-193 679.5 437 78.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 2.9e-193 678.7 461 75.3
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.0e-190 670.2 429 77.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.3e-188 663.3 429 77.4
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 6.2e-188 661.0 422 76.5
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 9.0e-187 657.1 420 77.4
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.5e-186 656.4 413 78.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.6e-186 655.6 420 77.6
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 4.5e-186 654.8 400 79.5
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.9e-185 652.1 411 77.9
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.1e-184 650.2 419 76.4
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 4.2e-184 648.3 392 80.9
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 5.5e-184 647.9 415 77.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.2e-183 646.7 400 79.0
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.7e-183 645.6 421 76.7
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 6.0e-183 644.4 423 75.4
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 7.9e-183 644.0 431 75.6
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.3e-182 643.3 416 76.7
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.0e-182 642.1 438 73.7
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 5.1e-182 641.3 410 77.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 5.1e-182 641.3 400 77.8
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-181 640.2 427 74.2
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.9e-181 639.4 426 73.9
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.9e-181 639.4 417 77.2
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.3e-181 638.6 432 73.8
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 4.3e-181 638.3 407 76.9
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.7e-180 635.2 414 75.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 2.4e-179 632.5 398 77.4
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.1e-179 632.1 433 72.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.1e-179 632.1 406 74.1
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 6.9e-179 630.9 429 73.0
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.2e-178 630.2 429 72.7
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.6e-178 629.0 392 77.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.4e-178 628.6 430 72.8
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.3e-177 626.7 434 72.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.9e-177 625.5 411 74.2
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 3.8e-177 625.2 468 69.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 3.8e-177 625.2 405 74.6
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 5.0e-177 624.8 392 76.8
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 8.5e-177 624.0 423 74.2
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.1e-176 623.6 435 70.1
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.1e-176 623.6 411 74.9
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.4e-176 623.2 411 74.0
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.4e-176 623.2 392 77.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.9e-176 622.9 417 73.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.9e-176 622.9 383 79.4
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.5e-176 622.5 405 74.3
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.2e-176 622.1 401 75.3
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 5.5e-176 621.3 429 71.8
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 9.4e-176 620.5 418 72.2
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.2e-175 620.2 428 73.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.7e-175 619.0 411 73.5
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 3.6e-175 618.6 425 72.2
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 3.6e-175 618.6 412 74.8
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.4e-174 616.7 401 74.3
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-174 616.3 401 74.3
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.8e-174 616.3 456 68.9
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.1e-174 614.8 422 73.2
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-173 613.6 400 73.5
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 4.3e-173 611.7 431 71.0
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 7.4e-173 610.9 431 71.0
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.7e-172 608.6 397 72.8
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 4.8e-172 608.2 392 75.5
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 6.3e-172 607.8 397 75.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.0e-170 602.8 403 73.4
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.0e-170 602.8 403 73.0
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 2.6e-170 602.4 403 73.4
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 3.8e-169 598.6 392 73.5
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.2e-168 595.5 416 69.5
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 4.2e-168 595.1 401 72.8
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 4.2e-168 595.1 401 72.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 5.5e-168 594.7 411 72.3
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.4e-163 580.1 400 69.5
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.5e-162 575.5 403 71.5
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.3e-161 573.5 413 67.6
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.3e-161 573.5 359 78.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 7.2e-160 567.8 432 67.4
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.6e-159 566.6 440 67.3
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.9e-158 562.0 547 57.2
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.4e-155 552.7 391 70.8
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.7e-153 546.6 429 65.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.9e-153 545.8 391 70.3
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.2e-151 540.4 330 81.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 8.0e-151 537.7 395 68.9
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 8.2e-148 527.7 396 63.4
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 7.0e-147 524.6 404 62.4
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.6e-146 523.5 344 72.4
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 2.2e-145 519.6 405 65.7
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.2e-143 513.8 398 61.3
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.7e-143 512.7 390 65.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 9.8e-141 504.2 381 63.5
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.7e-138 496.1 329 71.4
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 4.7e-135 485.3 334 72.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.5e-128 463.0 334 68.0
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 3.6e-127 459.1 411 60.1
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.2e-123 446.0 379 55.9
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 5.6e-120 435.3 345 67.0
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.2e-119 431.8 298 72.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.6e-111 407.1 265 75.5
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.4e-109 399.4 266 75.2
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 2.1e-106 390.2 277 70.4
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 6.6e-105 385.2 319 60.2
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 5.2e-102 375.6 415 47.7
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.6e-98 362.5 323 60.4
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.9e-96 357.1 228 75.9
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.4e-94 350.9 382 46.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.6e-87 327.4 399 42.9
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.2e-76 290.4 263 60.8
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 9.0e-70 268.5 170 74.1
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 9.3e-67 258.5 183 72.7
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.2e-63 247.3 273 48.7
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.0e-56 224.2 129 82.2
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.7e-55 221.1 179 63.7
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.2e-52 210.7 338 34.9
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.7e-50 203.8 122 80.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-49 199.1 167 58.7
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.9e-41 173.3 138 70.3
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 5.5e-35 152.9 142 57.0
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.3e-31 139.0 416 30.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.7e-28 131.3 84 72.6
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.0e-25 120.2 87 67.8
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.0e-24 117.9 95 62.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 4.2e-19 100.1 64 68.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 8.9e-17 92.4 70 65.7
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.7e-16 89.7 68 61.8
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.1e-14 85.5 62 69.4
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.8e-14 84.7 49 75.5
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.0e-09 68.9 51 60.8
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.5e-08 65.1 48 60.4
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.9e-06 58.2 74 47.3
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 3.2e-06 57.4 44 61.4
CBR_g3871 Chara braunii HOM05D005532 ORTHO05D006873 4.1e-06 57.0 103 35.0


User provided reference genes

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