Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 0.0e+00 1310.4 676 100.0
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 0.0e+00 1258.4 676 95.4
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 0.0e+00 1173.7 678 89.1
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 4.6e-312 1073.5 677 80.9
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 1.5e-305 1052.4 673 79.8
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 2.5e-300 1035.0 685 79.4
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.6e-299 1032.3 674 77.9
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.0e-297 1025.4 675 78.4
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 4.6e-294 1014.2 687 76.9
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.2e-278 963.0 677 74.3
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 9.3e-263 910.2 682 70.2
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 2.4e-258 895.6 676 69.2
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 9.0e-258 893.6 609 77.5
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 8.5e-256 887.1 677 67.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 3.0e-253 878.6 720 65.1
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 2.0e-252 875.9 678 67.1
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.7e-248 862.8 677 66.6
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 3.2e-247 858.6 685 66.7
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.6e-246 855.1 677 65.1
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.4e-245 853.2 686 66.3
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.5e-244 849.7 673 65.8
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 9.7e-244 847.0 676 67.0
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 8.2e-243 844.0 676 64.9
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.4e-242 842.4 679 64.4
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 7.0e-242 840.9 684 66.2
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.5e-241 839.7 682 64.4
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 8.5e-240 833.9 678 65.0
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.9e-239 832.8 686 63.8
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.6e-238 828.6 685 65.0
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 8.0e-238 827.4 678 64.3
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 2.6e-236 822.4 675 64.4
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.7e-235 818.5 675 62.8
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.7e-232 809.7 685 63.1
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 2.9e-232 808.9 679 63.6
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 2.9e-232 808.9 676 63.5
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 5.0e-232 808.1 679 63.6
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 5.5e-231 804.7 685 63.6
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 7.2e-231 804.3 679 63.0
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 8.0e-230 800.8 685 62.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.0e-229 798.9 674 63.1
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 3.0e-229 798.9 683 61.5
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.2e-228 797.0 677 61.4
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.4e-228 795.4 674 62.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.4e-226 790.0 697 61.3
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 2.4e-226 789.3 705 60.7
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.8e-221 773.1 674 61.0
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 8.8e-221 770.8 605 67.8
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 9.8e-220 767.3 676 60.5
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.4e-218 763.5 676 60.1
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 7.0e-218 761.1 674 60.5
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.0e-217 759.6 687 59.8
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 2.0e-217 759.6 688 59.4
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 5.9e-217 758.1 680 60.6
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.2e-214 750.4 674 59.5
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.4e-213 746.9 687 59.7
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 8.9e-213 744.2 684 57.9
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 5.7e-212 741.5 717 56.5
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 6.3e-211 738.0 669 58.6
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.4e-210 734.9 730 55.6
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.5e-209 732.3 680 56.8
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.2e-206 723.8 684 57.6
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.1e-206 723.0 485 74.6
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.1e-205 719.2 688 57.1
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.1e-205 719.2 679 57.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 8.9e-205 717.6 686 57.0
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.5e-204 716.8 685 57.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 4.9e-203 711.8 686 57.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.4e-202 709.5 686 57.0
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.2e-201 707.2 681 57.9
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 3.5e-201 705.7 683 57.0
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 7.8e-201 704.5 634 59.8
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.9e-200 702.2 675 56.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.1e-199 700.7 607 62.1
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.5e-199 700.3 680 56.8
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 5.6e-199 698.4 684 56.4
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 4.7e-198 695.3 682 56.3
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.8e-197 693.3 687 55.9
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.4e-194 683.7 679 56.4
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.2e-194 682.6 676 54.9
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 5.4e-194 681.8 674 52.8
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.3e-192 677.2 686 55.7
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 3.0e-192 676.0 665 56.2
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 6.6e-192 674.9 628 58.0
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.1e-191 674.1 633 59.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 2.5e-191 672.9 500 68.4
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 7.3e-183 644.8 681 52.4
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.6e-182 643.7 583 59.9
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.4e-178 630.6 624 54.8
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 3.9e-176 622.5 680 50.9
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 4.8e-174 615.5 714 50.0
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.5e-172 610.5 679 50.5
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 4.3e-167 592.4 644 53.0
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 4.5e-164 582.4 606 53.8
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.6e-161 573.9 450 65.3
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 2.1e-137 493.8 615 48.0
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 6.1e-137 492.3 276 87.3
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.1e-135 488.0 701 42.8
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 2.0e-132 477.2 447 53.7
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.0e-128 464.9 299 72.6
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 2.9e-123 446.8 705 41.4
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 2.1e-113 414.1 357 58.0
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 4.0e-88 330.1 218 80.7
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.2e-79 302.0 205 82.0
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.4e-55 220.3 303 48.8
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.9e-44 183.0 104 82.7
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.9e-42 178.3 104 80.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.9e-40 169.9 104 76.9
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.9e-40 169.9 100 79.0
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 3.1e-32 144.4 449 31.4
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.6e-31 139.8 85 76.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.2e-30 138.3 85 77.6
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 4.5e-15 87.4 328 25.0
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.5e-13 81.6 47 72.3
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 3.0e-11 74.7 183 30.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.8e-09 67.4 70 50.0
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.8e-06 57.8 51 56.9


User provided reference genes

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