Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 8.7e-229 796.6 393 100.0
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.5e-199 699.5 394 85.8
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.4e-181 639.8 390 80.5
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 4.1e-154 548.5 414 68.6
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 2.1e-153 546.2 398 69.1
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 4.3e-151 538.5 413 67.6
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 5.1e-144 515.0 385 69.4
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-143 513.8 407 65.1
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 7.6e-140 501.1 414 64.5
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 5.6e-135 485.0 368 64.9
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 2.1e-134 483.0 372 64.2
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 9.9e-132 474.2 384 63.5
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.5e-130 468.4 388 59.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.5e-129 465.7 431 57.1
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 4.6e-129 465.3 430 57.0
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.5e-127 460.3 389 59.9
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.7e-126 455.7 387 58.7
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.4e-125 453.8 378 60.6
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.4e-125 453.8 377 60.7
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.4e-125 453.0 381 62.2
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 4.0e-125 452.2 378 58.2
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.5e-124 450.3 396 57.3
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 4.5e-124 448.7 381 58.8
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.9e-123 446.0 380 60.0
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 4.2e-122 442.2 388 57.2
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 9.3e-122 441.0 381 60.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 6.0e-121 438.3 396 55.3
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 7.9e-121 438.0 387 57.6
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.9e-120 435.6 382 57.9
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.9e-119 433.3 384 57.0
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.1e-118 429.9 396 54.8
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 2.1e-118 429.9 379 57.5
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.7e-118 429.1 387 57.1
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 4.8e-118 428.7 400 55.0
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 8.2e-118 427.9 395 56.5
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.4e-117 427.2 399 56.4
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.8e-117 426.8 377 57.3
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 2.4e-117 426.4 386 56.7
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 6.9e-117 424.9 362 59.4
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.0e-116 423.3 379 55.9
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 2.6e-116 422.9 395 53.7
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 5.9e-116 421.8 388 56.4
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.3e-115 420.6 398 54.0
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 6.5e-115 418.3 421 51.5
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.4e-114 417.2 377 57.0
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 4.2e-114 415.6 377 57.3
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.3e-111 406.0 389 54.2
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.4e-109 400.6 389 53.2
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 2.0e-108 396.7 370 55.4
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 2.6e-108 396.4 363 57.0
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 3.4e-108 396.0 397 51.6
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 4.5e-108 395.6 379 55.7
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 5.9e-108 395.2 430 49.5
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 7.7e-108 394.8 377 54.4
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.3e-107 394.0 386 54.1
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 1.3e-107 394.0 402 53.5
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.2e-107 393.3 380 53.2
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 5.0e-107 392.1 296 61.1
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 6.5e-107 391.7 390 53.8
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 8.5e-107 391.3 376 53.2
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.1e-106 391.0 352 53.1
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.4e-106 390.6 382 51.8
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.5e-106 389.8 373 54.2
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 4.2e-106 389.0 406 51.2
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 5.5e-106 388.7 390 53.1
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.2e-106 388.3 412 50.2
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 7.2e-106 388.3 386 53.1
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 9.4e-106 387.9 377 54.4
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.2e-105 387.5 366 57.4
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 2.1e-105 386.7 367 51.8
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.7e-105 386.3 376 53.5
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 2.7e-105 386.3 383 52.2
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 3.6e-105 386.0 380 53.4
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.6e-105 385.6 346 56.4
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 6.1e-105 385.2 376 52.4
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.1e-105 385.2 270 65.6
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 5.7e-103 378.6 380 51.6
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 3.7e-102 375.9 381 52.0
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.8e-101 373.6 368 52.2
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.4e-101 373.2 346 54.6
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.4e-101 373.2 338 57.7
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 3.4e-100 369.4 378 51.1
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.3e-99 367.5 363 52.6
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.7e-99 367.1 377 51.2
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.9e-99 366.3 361 52.4
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 4.2e-98 362.5 370 48.4
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 5.2e-96 355.5 362 48.6
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-95 354.4 406 48.5
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.5e-95 354.0 387 50.6
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 9.7e-95 351.3 308 60.1
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.4e-93 346.7 388 48.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.1e-93 346.3 354 51.4
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.1e-93 345.9 368 49.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-92 344.4 359 50.7
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 2.0e-92 343.6 405 48.1
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.7e-91 340.5 356 49.2
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.7e-91 340.5 361 50.4
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.2e-91 340.1 202 77.7
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 5.0e-91 339.0 407 44.2
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.9e-90 337.0 356 48.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 5.5e-90 335.5 333 52.9
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.6e-89 334.0 287 56.8
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 6.1e-89 332.0 229 64.2
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 8.0e-89 331.6 256 60.9
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.0e-85 318.5 361 47.4
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.2e-84 317.8 268 57.5
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.5e-82 310.8 293 57.7
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 7.2e-82 308.5 394 46.4
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 2.7e-81 306.6 302 49.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.0e-80 304.7 356 47.8
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.8e-80 303.9 366 48.9
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 5.2e-80 302.4 276 50.4
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.5e-79 300.8 285 50.5
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.8e-78 296.6 273 50.2
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-76 291.2 250 65.6
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.6e-76 290.8 363 42.4
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 7.0e-69 265.4 280 53.2
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 8.6e-67 258.5 188 61.7
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.5e-66 256.9 153 77.1
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.7e-62 244.2 275 41.1
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.5e-58 231.1 179 56.4
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 3.3e-58 229.9 178 58.4
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.0e-47 194.1 202 50.0
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 2.1e-44 184.1 216 49.1
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.3e-42 175.6 229 48.0
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 9.2e-37 158.7 96 65.6
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 3.5e-36 156.8 97 66.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.3e-35 154.1 97 66.0
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 4.7e-33 146.4 110 59.1
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.4e-31 139.8 111 56.8
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 9.3e-29 132.1 108 56.5
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.7e-28 130.6 86 67.4
VMungo1080G0356 Vigna mungo HOM05D005177 ORTHO05D006175 6.6e-27 125.9 96 74.0
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.7e-27 125.6 100 54.0
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.1e-25 120.9 100 51.0
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.9e-21 107.8 89 56.2
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 1.9e-21 107.8 160 49.4
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 4.6e-20 103.2 114 53.5
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 8.7e-19 99.0 85 47.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 6.2e-17 92.8 97 50.5
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 5.6e-10 69.7 124 43.5
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.6e-10 69.7 43 72.1
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.8e-08 64.7 137 42.3
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 2.4e-08 64.3 42 64.3


User provided reference genes

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