Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1536.5 820 100.0
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1463.0 820 94.8
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1382.5 820 89.8
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1290.4 819 82.8
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1280.4 823 81.4
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1279.2 819 81.8
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1278.8 822 81.8
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1276.5 821 82.7
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1228.0 822 79.1
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 0.0e+00 1174.5 860 74.4
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1117.1 821 71.7
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1104.7 857 69.5
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1102.0 819 71.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1085.1 820 69.6
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1084.3 820 69.9
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1083.2 822 70.3
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1078.2 667 86.2
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1077.4 819 70.5
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1076.2 818 69.9
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 821 69.8
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 2.2e-311 1072.0 818 69.7
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 3.3e-310 1068.1 818 69.4
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.2e-309 1066.2 818 69.7
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.3e-308 1062.0 818 70.0
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.0e-308 1061.2 821 69.4
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 1.5e-307 1059.3 820 67.3
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.0e-307 1058.9 818 69.4
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 7.5e-307 1057.0 818 69.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.3e-306 1056.2 825 68.6
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.7e-304 1048.5 788 70.8
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 2.7e-304 1048.5 819 68.3
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.2e-301 1039.6 820 68.2
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.7e-301 1037.7 821 67.6
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.8e-300 1035.8 821 68.3
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 2.0e-299 1032.3 822 67.2
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.2e-298 1028.9 817 67.3
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 6.4e-298 1027.3 821 68.0
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 2.4e-297 1025.4 786 69.7
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 4.1e-297 1024.6 820 67.0
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 9.2e-297 1023.5 820 67.9
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 5.6e-294 1014.2 816 65.6
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.2e-293 1013.1 816 65.3
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 4.7e-293 1011.1 820 66.1
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 3.1e-292 1008.4 821 65.7
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 4.0e-292 1008.1 820 65.9
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.2e-291 1006.5 817 65.2
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 3.2e-289 998.4 821 66.0
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 9.2e-289 996.9 821 64.9
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 2.7e-288 995.3 819 65.0
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 5.0e-287 991.1 827 63.6
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 2.8e-285 985.3 814 64.6
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 3.6e-285 984.9 819 64.8
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.1e-284 983.4 893 62.0
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 2.3e-284 982.2 823 64.8
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 5.2e-284 981.1 844 63.2
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 5.8e-283 977.6 826 64.2
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.3e-282 976.5 822 64.1
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 1.3e-282 976.5 756 68.7
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 8.3e-282 973.8 818 64.2
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 5.4e-281 971.1 822 64.7
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 1.7e-279 966.1 818 63.9
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.3e-279 965.7 819 63.0
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 3.0e-279 965.3 849 63.0
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 3.9e-279 964.9 821 62.9
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.5e-278 963.0 817 63.5
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.2e-277 959.9 819 62.5
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.8e-277 958.7 842 62.8
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 3.6e-277 958.4 819 62.6
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 6.8e-276 954.1 834 63.5
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 2.6e-275 952.2 819 63.0
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 5.8e-275 951.0 819 62.1
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 9.9e-275 950.3 819 62.3
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 9.9e-275 950.3 817 63.4
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 8.4e-274 947.2 756 66.8
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.4e-273 946.4 819 62.3
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 5.4e-273 944.5 819 62.0
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.0e-271 940.3 819 61.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.2e-269 933.3 816 63.4
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 2.4e-268 929.1 818 62.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 4.0e-268 928.3 835 60.8
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 2.2e-266 922.5 816 62.6
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 2.9e-266 922.2 819 62.4
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 6.6e-263 911.0 862 58.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 8.7e-263 910.6 820 60.7
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.5e-262 909.8 828 60.4
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.3e-261 906.7 757 63.8
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 8.1e-261 904.0 920 55.7
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.8e-260 902.9 821 60.7
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 2.2e-242 842.8 820 56.1
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.8e-239 833.2 822 55.2
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.8e-237 825.9 819 57.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 7.6e-235 817.8 623 72.6
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.1e-228 795.8 675 64.1
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 4.8e-221 771.9 865 50.8
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.4e-220 770.4 824 55.2
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.4e-220 770.4 817 54.5
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.0e-199 701.0 594 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 3.9e-170 602.8 777 47.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 7.3e-161 572.0 837 43.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.2e-160 571.2 790 43.9
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 4.6e-147 526.2 543 54.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 1.3e-144 518.1 862 37.9
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 8.1e-144 515.4 785 39.5
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.1e-138 496.1 375 67.7
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 8.7e-138 495.4 843 37.7
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.5e-134 484.6 324 75.6
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.9e-133 480.3 403 66.3
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.9e-132 477.6 489 53.6
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.7e-107 393.3 269 72.5
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.1e-100 372.1 488 47.1
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.2e-99 368.6 275 66.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.6e-99 368.2 274 69.0
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.1e-87 327.0 311 58.5
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.8e-71 275.0 242 64.5
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-60 238.8 220 61.4
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 4.1e-55 220.7 813 26.1
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.0e-50 204.1 359 37.6
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.2e-43 182.6 163 58.9
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.8e-42 178.7 850 23.9
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.1e-38 165.2 206 48.1
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 4.3e-36 157.5 118 68.6
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 7.3e-36 156.8 93 81.7
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.2e-33 149.4 244 42.2
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.7e-32 145.6 122 63.9
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.9e-28 132.1 117 63.2
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.8e-27 128.3 105 65.7
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 3.4e-25 121.3 86 73.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 7.1e-23 113.6 71 73.2
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 7.1e-23 113.6 71 73.2
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.6e-22 112.5 70 85.7
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-21 109.0 156 44.2
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.5e-17 94.4 123 41.5
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.8e-16 91.3 68 69.1
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.1e-14 85.5 79 58.2
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 3.1e-10 71.6 68 57.4
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.4e-07 62.8 116 33.6
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 5.5e-07 60.8 47 68.1


User provided reference genes

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