Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 0.0e+00 1102.4 925 100.0
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 8.9e-248 860.9 934 84.9
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.9e-203 712.6 943 73.0
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 5.3e-192 675.6 947 68.8
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 3.7e-169 599.7 959 62.8
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 5.5e-165 585.9 940 63.0
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.8e-163 580.9 944 64.2
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.4e-152 544.7 957 57.3
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 4.2e-149 533.1 950 47.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 7.0e-144 515.8 931 59.5
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.5e-138 498.0 995 57.4
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 2.8e-132 477.2 939 58.9
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 2.6e-130 470.7 965 49.0
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.4e-123 448.4 1013 57.2
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-88 331.6 964 51.0
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.0e-86 325.9 953 49.2
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.5e-85 322.0 963 53.3
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 7.4e-85 319.7 960 52.5
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 1.3e-84 318.9 950 51.2
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 6.2e-84 316.6 950 50.0
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 3.4e-82 310.8 947 50.8
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 3.4e-82 310.8 947 50.8
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 4.5e-82 310.5 984 47.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.5e-80 304.7 969 47.4
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.6e-79 302.0 945 55.1
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.1e-79 301.6 964 51.6
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 3.5e-79 300.8 248 69.4
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 1.6e-76 292.0 965 48.6
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.1e-75 289.3 227 72.7
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.3e-75 287.0 245 66.5
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.0e-74 285.0 959 49.1
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 4.5e-74 283.9 947 52.7
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 3.8e-73 280.8 951 49.4
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.4e-72 278.9 249 64.7
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 4.2e-72 277.3 974 52.4
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.0e-70 272.7 943 50.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.4e-70 272.3 205 72.2
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.4e-70 272.3 250 63.6
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.4e-70 272.3 860 47.6
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 6.7e-70 270.0 951 51.5
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 8.8e-70 269.6 246 65.0
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 4.3e-69 267.3 958 47.8
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 5.7e-69 266.9 941 50.1
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.7e-69 266.9 1001 44.4
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.2e-68 265.0 239 63.2
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 4.8e-68 263.8 962 51.2
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.2e-68 263.1 962 47.6
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.4e-67 262.3 246 61.4
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.2e-66 259.2 932 50.8
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 2.0e-66 258.5 240 64.2
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.6e-66 258.1 962 51.6
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.4e-66 257.7 967 46.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.4e-66 257.7 249 62.7
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 5.9e-66 256.9 243 62.1
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.9e-66 256.9 998 44.7
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.2e-65 255.0 242 60.7
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-65 255.0 961 48.3
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 3.8e-65 254.2 212 67.5
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 6.5e-65 253.4 235 62.6
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 8.5e-65 253.1 226 64.6
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.4e-64 252.3 231 62.3
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 4.2e-64 250.8 987 48.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.2e-63 249.2 212 66.5
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 2.1e-63 248.4 232 62.9
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.7e-63 248.1 230 64.3
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 2.7e-63 248.1 995 44.2
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.8e-62 245.4 163 76.7
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 6.7e-62 243.4 987 45.7
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 8.8e-62 243.0 244 59.0
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 1.5e-61 242.3 943 52.3
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 5.7e-61 240.4 995 47.6
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.8e-60 238.0 979 42.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.7e-60 237.7 990 45.9
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.4e-59 235.7 265 57.0
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.8e-59 235.3 244 57.8
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.4e-59 235.0 246 61.8
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.4e-58 231.1 233 60.9
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 5.9e-58 230.3 994 42.1
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 5.9e-58 230.3 245 56.7
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.7e-57 228.8 996 43.1
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 2.9e-57 228.0 997 45.0
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 2.9e-57 228.0 247 58.3
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.8e-57 227.6 236 60.6
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 8.5e-57 226.5 249 56.2
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 8.5e-57 226.5 954 45.7
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.9e-56 225.3 249 56.6
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.9e-56 225.3 967 47.9
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 2.5e-56 224.9 140 79.3
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 3.2e-56 224.6 213 60.1
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 4.2e-56 224.2 249 54.6
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 4.2e-56 224.2 135 83.7
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 5.5e-56 223.8 965 45.7
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 7.2e-56 223.4 940 48.8
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.6e-55 221.1 236 55.9
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.6e-55 221.1 236 55.9
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 6.1e-55 220.3 134 82.1
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 8.0e-55 219.9 230 56.5
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.0e-54 219.5 956 45.0
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 6.7e-54 216.9 250 54.4
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 8.8e-54 216.5 997 44.2
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 4.4e-53 214.2 212 57.5
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 5.7e-53 213.8 246 57.3
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 5.7e-53 213.8 202 63.4
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.7e-52 212.2 218 60.1
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.7e-52 211.1 252 53.2
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 3.1e-51 208.0 129 77.5
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.0e-50 205.3 173 60.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 2.2e-49 201.8 976 43.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.2e-48 196.8 113 85.8
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.1e-47 195.3 881 46.7
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.1e-47 195.3 229 54.1
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 4.7e-47 194.1 997 40.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 8.0e-47 193.4 134 71.6
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.4e-46 192.6 207 59.4
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.3e-41 176.0 164 58.5
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 8.8e-38 163.3 197 51.8
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 4.2e-32 144.4 843 48.9
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.2e-31 142.9 149 53.7
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.4e-30 139.4 134 59.7
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 5.7e-29 134.0 182 46.7
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.3e-28 132.9 127 57.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.6e-23 114.8 150 45.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 6.8e-22 110.5 145 44.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 2.2e-20 105.5 86 66.3
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 4.6e-18 97.8 425 41.4
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.7e-17 95.9 124 53.2
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.8e-15 88.6 58 74.1
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 9.8e-13 80.1 360 40.3
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-09 69.3 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 2.3e-06 58.9 121 32.2


User provided reference genes

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