Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.8e-309 1065.4 719 100.0
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 2.5e-237 825.9 768 80.3
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.1e-200 704.1 607 70.7
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 6.6e-166 588.6 609 59.8
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 4.3e-149 532.7 779 61.7
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 8.4e-145 518.5 795 61.4
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 1.1e-141 508.1 791 60.8
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 1.0e-134 485.0 634 53.8
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 9.0e-131 471.9 648 51.2
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 5.8e-130 469.2 648 44.4
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 1.1e-128 464.9 649 51.3
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 6.1e-127 459.1 653 42.7
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 6.7e-126 455.7 785 58.7
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.1e-125 454.9 649 45.0
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 2.2e-124 450.7 640 50.6
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 8.2e-124 448.7 791 57.0
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 4.5e-122 443.0 646 48.3
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.7e-121 441.0 621 49.3
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.1e-120 438.3 652 49.7
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 1.9e-120 437.6 653 49.2
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 7.2e-120 435.6 643 49.8
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 1.0e-118 431.8 653 49.6
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 1.4e-118 431.4 649 41.0
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 9.7e-117 425.2 636 48.6
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 2.2e-116 424.1 647 44.7
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.8e-116 422.9 553 47.0
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 1.8e-115 421.0 649 47.0
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 8.5e-113 412.1 623 48.0
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 1.4e-112 411.4 618 43.2
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 1.2e-111 408.3 618 45.5
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.6e-111 407.9 635 47.9
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 2.1e-111 407.5 636 48.0
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 3.6e-111 406.8 618 43.2
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.4e-110 404.8 657 46.1
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.8e-110 404.4 657 46.1
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 2.3e-110 404.1 645 46.0
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 2.3e-110 404.1 620 49.5
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 5.1e-110 402.9 649 47.5
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 4.4e-109 399.8 652 45.6
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 9.1e-107 392.1 618 48.2
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.6e-106 391.3 627 44.0
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 1.5e-104 384.8 622 47.1
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.5e-104 384.8 512 54.9
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-104 384.8 480 46.5
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.9e-104 384.4 614 46.4
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 4.2e-104 383.3 636 46.9
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 7.2e-104 382.5 652 45.9
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 1.6e-103 381.3 615 47.2
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.6e-103 381.3 615 47.3
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 2.1e-103 380.9 650 46.0
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.7e-103 380.6 614 47.1
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 8.0e-103 379.0 614 46.1
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.8e-102 377.9 614 46.7
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 4.0e-102 376.7 645 44.2
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 8.8e-102 375.6 648 45.4
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.1e-101 375.2 635 45.5
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.5e-101 374.8 654 45.1
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 2.0e-101 374.4 649 44.2
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 3.3e-101 373.6 644 45.3
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 4.4e-101 373.2 651 45.3
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 1.3e-100 371.7 651 45.5
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 4.8e-100 369.8 612 46.7
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 3.1e-99 367.1 614 45.6
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 1.6e-98 364.8 649 45.1
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.0e-98 364.4 653 43.0
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 2.0e-98 364.4 578 65.9
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 5.0e-97 359.8 627 45.9
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.5e-96 358.2 649 45.0
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 1.9e-96 357.8 651 42.9
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 5.5e-96 356.3 627 45.8
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 3.6e-95 353.6 639 44.1
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 1.0e-94 352.1 651 41.8
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 1.4e-94 351.7 530 48.5
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 2.3e-94 350.9 641 43.4
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 2.3e-94 350.9 642 43.1
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.0e-93 347.8 653 41.7
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 5.7e-93 346.3 638 43.4
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 2.0e-90 337.8 529 47.4
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 8.5e-89 332.4 650 42.3
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 8.0e-87 325.9 656 40.7
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 3.4e-85 320.5 624 43.9
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.9e-82 309.7 647 41.0
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.3e-81 308.5 572 44.2
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.5e-80 305.1 610 40.7
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 8.0e-79 299.3 617 42.1
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 5.2e-78 296.6 620 42.6
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.5e-77 295.0 455 49.7
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.3e-73 282.0 620 40.2
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.2e-71 275.4 214 65.0
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 1.8e-70 271.6 203 64.0
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 6.4e-68 263.1 496 45.0
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 1.1e-67 262.3 632 39.2
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 8.6e-65 252.7 628 36.9
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 3.3e-64 250.8 201 63.2
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 2.8e-63 247.7 199 59.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 6.2e-63 246.5 621 39.5
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 3.1e-62 244.2 189 64.6
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 4.0e-62 243.8 497 35.0
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 2.0e-61 241.5 218 56.4
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 2.4e-59 234.6 643 37.5
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 4.1e-59 233.8 292 46.2
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 2.1e-58 231.5 238 51.3
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 8.1e-55 219.5 230 48.7
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 1.7e-52 211.8 202 52.5
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 1.7e-49 201.8 256 44.5
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.4e-46 192.2 281 42.0
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 6.4e-44 183.3 170 54.7
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 3.9e-41 174.1 326 48.5
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.6e-39 168.7 161 50.9
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 4.5e-37 160.6 107 72.0
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 1.1e-35 156.0 107 70.1
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 2.0e-29 135.2 134 55.2
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 6.0e-26 123.6 105 55.2
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 1.0e-17 96.3 195 35.4
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 1.0e-17 96.3 195 35.4
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.8e-17 95.5 113 50.4
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 3.0e-17 94.7 604 27.8
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 8.7e-17 93.2 160 35.0
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 3.1e-14 84.7 132 42.4
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 5.0e-12 77.4 46 78.3
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 5.5e-11 73.9 49 73.5
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 4.6e-10 70.9 42 76.2
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 7.9e-10 70.1 91 41.8
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 2.3e-09 68.6 42 78.6
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 6.7e-09 67.0 39 79.5
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 2.5e-08 65.1 280 24.3
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 4.8e-07 60.8 247 23.1
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 1.8e-06 58.9 244 21.3
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 4.1e-06 57.8 242 24.0
EL10Ac9g22193 Beta vulgaris HOM05D025815 ORTHO05D018419 9.1e-06 56.6 73 35.6
MELO3C017038.2 Cucumis melo HOM05D006218 ORTHO05D007338 9.1e-06 56.6 236 22.5


User provided reference genes

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