Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.7e-139 498.8 278 100.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-126 456.4 262 97.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.2e-120 436.8 274 87.6
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 6.8e-119 431.0 276 85.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 82.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.3e-114 416.8 275 84.7
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.9e-114 415.2 275 83.3
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 3.9e-114 415.2 275 84.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.9e-113 412.9 275 83.3
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 5.6e-113 411.4 275 83.3
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.6e-113 411.4 275 82.2
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 7.3e-113 411.0 275 83.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 9.5e-113 410.6 276 81.5
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.8e-112 409.1 275 82.2
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 4.7e-112 408.3 275 82.5
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-111 406.4 275 82.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.4e-111 406.0 275 81.8
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.4e-111 406.0 275 81.8
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.4e-111 406.0 275 81.1
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.4e-111 406.0 262 85.9
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.2e-111 404.8 275 80.7
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.2e-111 404.8 275 80.7
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 6.8e-111 404.4 275 80.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 6.8e-111 404.4 275 80.0
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 8.9e-111 404.1 275 81.5
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.2e-110 403.7 275 80.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.2e-110 403.7 275 81.1
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.5e-110 403.3 275 80.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.5e-110 403.3 275 81.5
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.6e-110 402.5 275 81.5
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.6e-110 402.5 275 81.5
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.6e-110 402.5 275 81.5
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.4e-110 401.7 275 80.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 5.8e-110 401.4 274 80.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-109 400.2 275 81.1
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.3e-109 400.2 275 80.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.7e-109 399.8 275 80.7
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.7e-109 399.8 275 81.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.2e-109 399.4 275 79.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 79.3
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 79.6
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 79.3
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 79.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.9e-109 399.1 275 80.7
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.8e-109 398.7 275 79.6
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.8e-109 398.7 275 79.6
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 8.4e-109 397.5 281 78.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.4e-108 396.7 275 79.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.4e-108 396.7 275 79.3
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.9e-108 396.4 275 80.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.4e-108 396.0 275 78.9
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.4e-108 396.0 275 78.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.4e-108 396.0 275 79.3
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.2e-108 395.6 275 81.1
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 7.1e-108 394.4 275 80.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.6e-107 393.3 276 79.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.7e-107 392.5 274 78.8
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.5e-107 392.1 275 78.9
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 4.6e-107 391.7 275 78.2
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 7.8e-107 391.0 275 78.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.0e-106 390.6 276 77.5
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.0e-106 390.6 299 75.6
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.3e-106 390.2 276 78.6
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.7e-106 389.8 275 77.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.3e-106 389.4 275 77.8
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.3e-106 389.4 275 78.2
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 3.9e-106 388.7 276 77.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 3.9e-106 388.7 275 78.2
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 5.1e-106 388.3 275 78.5
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.1e-105 387.1 275 77.8
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.5e-105 386.7 275 76.7
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 3.3e-105 385.6 276 78.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 4.3e-105 385.2 275 76.4
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 4.3e-105 385.2 275 76.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 7.3e-105 384.4 275 77.1
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 9.6e-105 384.0 262 81.7
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-104 382.1 322 70.5
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.6e-104 382.1 262 80.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.1e-103 380.6 262 79.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.4e-103 379.4 277 76.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.0e-103 378.6 275 74.5
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.2e-102 377.1 275 76.7
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.8e-102 374.8 274 77.4
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 7.6e-102 374.4 278 77.0
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.7e-101 373.2 276 75.0
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.7e-101 373.2 319 67.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.4e-100 370.2 271 77.5
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 4.2e-100 368.6 275 75.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 5.4e-100 368.2 275 75.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.2e-99 367.1 275 73.1
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.6e-99 366.7 275 73.8
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 7.8e-99 364.4 256 81.2
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.0e-98 362.5 319 63.3
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 8.7e-98 360.9 316 65.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-97 360.1 265 78.5
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.5e-97 359.4 298 66.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 3.3e-97 359.0 265 76.6
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.3e-97 359.0 269 71.0
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.8e-96 355.9 255 76.5
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 8.1e-96 354.4 275 72.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.8e-95 353.2 275 68.0
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-95 352.8 247 82.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-95 352.8 247 82.6
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.2e-94 350.5 276 71.7
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.6e-94 349.4 273 74.4
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 5.8e-94 348.2 267 72.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-93 345.9 333 65.8
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.9e-93 345.1 356 56.7
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-91 339.7 275 72.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-90 336.3 275 72.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 8.7e-90 334.3 228 80.7
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.3e-88 330.5 228 81.1
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 7.6e-86 321.2 223 81.6
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 8.4e-85 317.8 268 66.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.1e-84 317.4 277 60.6
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.5e-84 316.2 275 63.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.1e-81 307.4 278 62.9
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 4.3e-81 305.4 223 78.5
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 5.6e-81 305.1 223 77.1
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.1e-80 303.1 188 91.5
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 4.0e-79 298.9 280 61.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.1e-75 286.6 312 59.6
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.7e-64 249.2 256 56.6
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.4e-62 242.7 274 51.8
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-60 237.7 288 51.4
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 8.8e-58 228.0 182 76.9
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.2e-53 213.4 158 69.6
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.2e-51 207.6 146 81.5
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 8.0e-51 204.9 135 77.0
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 9.7e-49 198.0 129 79.1
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 8.2e-48 194.9 130 79.2
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.8e-47 193.7 306 44.4
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 9.1e-47 191.4 102 93.1
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 3.1e-39 166.4 94 88.3
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.7e-37 160.6 90 88.9
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.2e-32 143.7 81 85.2
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.1e-31 138.3 153 54.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.0e-26 123.2 77 76.6
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 8.9e-26 121.7 81 75.3
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.2e-25 121.3 71 83.1
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-25 121.3 71 83.1
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 3.9e-21 106.3 58 86.2
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.9e-20 104.0 157 44.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 9.5e-20 101.7 102 55.9
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.1e-19 100.5 255 33.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 4.7e-19 99.4 145 39.3
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-18 97.8 72 87.5
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.1e-18 96.7 153 41.8
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 6.8e-18 95.5 152 45.4
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.4e-17 92.8 72 80.6
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.4e-15 87.0 142 40.8
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 5.4e-15 85.9 87 63.2
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-14 84.7 153 37.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-13 80.1 44 84.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.0e-13 80.1 43 88.4
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 5.0e-13 79.3 47 78.7
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.0e-13 79.3 142 35.2
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 8.6e-13 78.6 45 86.7
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.1e-11 73.9 158 37.3
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-11 72.8 162 34.6
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.7e-08 63.2 265 29.1
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.4e-07 61.2 140 39.3
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 4.6e-06 56.2 46 60.9


User provided reference genes

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