Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 0.0e+00 1283.5 684 100.0
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.8e-304 1047.7 685 84.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.2e-219 766.1 779 56.0
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 6.4e-211 738.0 678 58.8
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 5.3e-205 718.4 710 57.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.1e-198 694.5 677 57.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 8.1e-198 694.5 693 56.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 8.7e-192 674.5 642 58.4
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 7.7e-180 634.8 691 53.1
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.2e-178 629.4 685 52.3
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.3e-174 617.5 687 51.8
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 8.2e-174 614.8 619 54.9
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.3e-166 590.9 609 54.7
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 3.7e-166 589.3 811 45.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.6e-164 583.2 401 74.3
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 6.3e-158 562.0 473 64.3
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.4e-157 560.1 706 46.2
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 7.0e-157 558.5 683 47.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.1e-154 551.2 898 40.0
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.4e-149 534.3 662 48.3
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 9.1e-149 531.6 682 46.2
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.1e-146 524.6 764 41.1
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.0e-144 516.5 722 43.1
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.7e-139 500.7 756 41.5
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 3.8e-139 499.6 784 40.8
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 8.0e-137 491.9 788 39.1
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 8.9e-136 488.4 726 41.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.5e-135 485.3 788 38.2
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.3e-131 474.6 653 43.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.2e-127 461.5 704 40.9
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.5e-127 461.1 636 44.0
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 5.4e-125 452.6 655 42.1
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.6e-124 451.1 700 39.9
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 6.0e-124 449.1 700 39.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-123 448.0 696 40.4
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.3e-123 447.2 709 40.1
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 5.0e-123 446.0 659 42.2
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.1e-122 444.9 740 38.9
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 9.5e-122 441.8 707 40.2
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.1e-121 440.7 700 39.1
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.4e-120 438.0 722 39.5
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.2e-120 436.0 702 39.6
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 5.8e-119 432.6 696 39.5
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.9e-118 430.3 756 38.5
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.7e-118 429.9 775 36.4
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 2.7e-116 423.7 684 39.0
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.8e-116 422.2 777 37.5
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.7e-115 421.0 703 39.1
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.3e-115 420.6 302 73.8
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.1e-113 414.1 714 37.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.4e-112 411.4 283 83.0
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.3e-112 410.6 773 36.0
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 2.2e-110 404.1 696 38.4
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 3.8e-110 403.3 704 38.2
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.8e-108 395.6 703 37.6
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.3e-102 378.3 869 32.3
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 3.8e-102 376.7 818 34.0
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.0e-99 368.6 686 37.0
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 6.6e-99 365.9 860 32.7
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 4.8e-97 359.8 747 33.9
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.5e-95 354.8 494 42.3
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 6.0e-92 342.8 576 39.1
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 6.0e-92 342.8 692 35.0
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 3.3e-90 337.0 365 52.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 4.3e-90 336.7 677 34.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 7.4e-90 335.9 715 35.2
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-89 335.1 449 46.1
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 2.6e-87 327.4 802 32.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.6e-87 325.9 817 31.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 7.6e-87 325.9 697 34.1
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.3e-86 325.1 738 32.5
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-86 324.7 344 49.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 4.9e-86 323.2 681 33.8
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 6.4e-86 322.8 686 34.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 8.4e-86 322.4 681 34.5
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.9e-85 321.2 820 30.9
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.9e-85 321.2 693 32.9
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 4.2e-85 320.1 821 32.5
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.2e-84 318.5 695 34.0
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 2.1e-84 317.8 679 34.5
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.0e-84 316.2 352 48.6
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.3e-83 314.3 678 33.0
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-82 310.8 396 46.2
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 4.3e-82 310.1 723 31.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.8e-81 306.6 302 52.6
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.8e-80 304.7 683 31.5
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.6e-79 300.8 337 48.1
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.6e-79 300.8 683 31.8
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 7.6e-79 299.3 716 30.2
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.8e-78 297.0 332 48.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.8e-78 297.0 356 45.5
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.9e-78 296.6 337 48.1
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.4e-77 295.0 390 44.9
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.9e-77 294.7 849 29.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.2e-77 293.9 751 32.1
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.3e-75 288.5 717 32.6
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 2.5e-74 284.3 711 31.9
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 4.3e-74 283.5 714 30.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.6e-74 282.3 299 49.8
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 4.8e-73 280.0 867 27.6
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.7e-70 271.6 834 28.3
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.8e-70 270.4 735 29.3
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.6e-68 263.5 345 43.5
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 9.7e-66 255.8 344 41.6
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.3e-65 255.4 694 30.5
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 2.8e-65 254.2 331 42.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 4.1e-64 250.4 607 32.8
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.5e-63 246.9 748 27.9
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.9e-63 246.5 249 50.6
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 6.5e-62 243.0 345 39.1
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.2e-61 240.4 685 30.1
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.6e-60 238.4 291 46.0
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-60 238.4 720 27.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-58 231.9 494 35.4
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.6e-58 231.1 334 40.4
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.2e-57 228.0 689 27.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.8e-57 227.6 399 39.1
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.2e-55 222.2 696 27.6
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.0e-55 221.5 333 39.9
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 2.6e-55 221.1 350 37.7
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.1e-52 211.5 340 38.5
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.6e-50 204.5 575 29.4
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 4.8e-49 200.3 764 26.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 5.9e-47 193.4 298 38.3
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.2e-45 187.6 614 30.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.8e-41 174.5 336 36.0
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.7e-39 166.4 213 44.1
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 7.7e-39 166.4 213 44.1
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.9e-37 161.8 207 43.5
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.7e-36 157.1 310 35.5
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.0e-35 156.0 208 41.3
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.1e-32 146.0 311 34.7
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.0e-31 141.7 163 42.9
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.0e-30 139.4 178 43.3
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.2e-29 134.4 126 54.0
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 4.2e-29 134.0 123 56.1
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 2.1e-28 131.7 178 42.7
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 4.7e-28 130.6 178 42.7
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 3.0e-27 127.9 199 38.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 6.8e-27 126.7 254 34.6
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 8.8e-27 126.3 183 41.5
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.7e-25 122.1 180 39.4
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.1e-24 119.4 164 42.7
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 2.0e-23 115.2 292 34.6
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.0e-22 112.8 128 44.5
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.5e-21 108.2 93 54.8
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.5e-21 108.2 166 38.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.8e-20 104.8 143 38.5
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.7e-20 104.0 113 47.8
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 2.3e-19 101.7 115 46.1
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.4e-16 91.7 74 62.2
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.6e-14 83.2 136 39.7
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.3e-13 81.3 123 38.2
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 8.0e-12 76.6 126 37.3
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 8.9e-11 73.2 163 34.4
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 2.2e-09 68.6 99 37.4
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.4e-09 67.0 86 41.9
arahy.Tifrunner.gnm1.ann1.369X3S Arachis hypogaea HOM05D004076 ORTHO05D004606 9.2e-08 63.2 179 28.5
QL93p0319_0003 Quercus lobata HOM05D000002 ORTHO05D000001 4.6e-07 60.8 50 58.0
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-06 59.3 62 50.0
MBI08_g23496_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.9e-06 57.8 50 58.0


User provided reference genes

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