Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.0e-269 931.8 448 100.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.0e-204 716.8 382 90.1
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.0e-193 678.7 390 83.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.2e-189 666.8 408 79.2
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.4e-166 590.1 403 70.2
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.4e-166 590.1 390 70.5
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.4e-166 589.3 405 69.4
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.4e-166 589.3 383 71.5
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 3.2e-166 589.0 382 72.0
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 5.4e-166 588.2 391 72.1
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.5e-163 579.3 392 69.9
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 6.6e-156 554.7 393 67.9
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 7.3e-147 524.6 382 63.6
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 7.3e-147 524.6 390 64.1
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.1e-146 523.1 408 60.8
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 9.9e-144 514.2 383 64.8
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.2e-142 509.2 382 64.7
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.2e-142 509.2 411 59.6
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 9.2e-142 507.7 400 63.0
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.2e-141 507.3 399 63.2
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.6e-141 506.9 381 64.0
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 3.5e-141 505.8 387 62.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.3e-140 503.8 380 62.6
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 8.7e-140 501.1 405 58.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.1e-139 500.7 387 61.5
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 9.6e-139 497.7 407 59.2
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.8e-138 496.1 419 57.8
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.6e-138 495.7 392 58.9
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.2e-138 495.0 407 59.0
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.2e-138 495.0 390 60.0
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 5.3e-137 491.9 405 59.5
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 6.9e-137 491.5 405 59.0
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 9.0e-137 491.1 390 59.7
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.5e-136 490.3 405 57.8
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 5.8e-136 488.4 390 60.3
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.9e-135 486.1 382 60.2
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.8e-135 485.7 385 60.5
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 8.4e-135 484.6 404 58.4
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.9e-134 483.4 382 60.2
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 4.2e-134 482.3 389 57.6
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.2e-134 482.3 390 59.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.4e-134 481.9 401 58.4
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.2e-133 480.7 382 59.4
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.1e-133 479.9 407 57.0
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.0e-133 478.4 382 60.5
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.0e-132 477.6 390 59.5
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.3e-132 476.5 383 60.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.9e-132 475.7 390 59.0
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 5.1e-132 475.3 405 56.0
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.5e-131 473.8 390 59.0
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 4.3e-131 472.2 382 58.6
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 7.3e-131 471.5 393 59.3
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 9.6e-131 471.1 381 58.8
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.1e-130 469.9 382 58.4
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.8e-130 469.5 384 60.9
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.8e-130 469.5 382 58.9
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 8.1e-130 468.0 390 60.5
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.8e-129 466.8 382 58.6
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.1e-129 466.1 390 58.5
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.0e-129 465.7 382 57.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.3e-129 465.3 408 56.1
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 9.0e-129 464.5 405 56.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 9.9e-128 461.1 403 56.1
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 9.9e-128 461.1 417 54.2
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.3e-127 460.7 382 57.3
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.7e-127 460.3 389 56.6
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 2.9e-127 459.5 387 55.6
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 8.4e-127 458.0 403 55.6
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.9e-126 456.8 407 56.0
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 2.4e-126 456.4 406 56.2
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.2e-125 454.1 407 55.3
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 3.0e-124 449.5 382 55.0
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 6.7e-124 448.4 381 55.6
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 9.6e-123 444.5 382 54.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 6.9e-121 438.3 382 56.0
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 6.9e-121 438.3 390 53.3
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.0e-120 436.8 405 56.0
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.5e-120 435.6 382 54.2
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 7.6e-120 434.9 383 54.8
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 7.6e-120 434.9 383 54.8
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-119 433.7 382 54.7
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.7e-119 433.7 382 54.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 3.8e-119 432.6 383 53.3
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 7.1e-118 428.3 382 53.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.5e-115 420.6 382 51.8
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.9e-115 420.2 393 52.2
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.8e-114 416.4 404 52.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.8e-114 415.6 393 51.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.5e-112 410.6 402 50.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 4.2e-110 402.5 396 50.8
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 7.9e-109 398.3 385 51.4
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.2e-106 390.2 311 59.2
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.7e-106 389.4 326 60.4
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.4e-104 382.9 390 52.1
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.5e-104 382.5 382 50.0
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 5.9e-104 382.1 384 50.8
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.9e-103 379.8 382 47.1
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-102 377.9 321 58.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.5e-102 376.7 385 52.5
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.6e-101 372.5 383 48.6
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.6e-101 372.5 383 48.6
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.6e-101 372.5 383 48.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 7.9e-101 371.7 393 48.3
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.5e-99 366.7 385 48.3
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.7e-98 364.0 382 49.5
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.1e-97 359.4 382 49.2
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 4.5e-96 355.9 308 58.1
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.4e-94 350.9 383 47.0
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.7e-93 346.7 382 49.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.7e-93 346.7 400 45.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 5.1e-92 342.4 400 44.2
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-91 340.5 309 54.7
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.0e-88 330.5 407 45.0
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.2e-86 323.2 260 58.8
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 6.1e-85 318.9 389 44.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.2e-77 294.7 332 50.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 4.8e-74 282.7 244 54.9
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.3e-74 282.3 308 45.1
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 9.1e-73 278.5 382 41.1
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 2.7e-72 276.9 379 38.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.7e-71 274.2 379 39.3
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.0e-68 265.0 385 37.7
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.3e-66 258.1 385 38.4
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.4e-65 253.8 372 38.7
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 7.7e-64 248.8 313 45.0
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.0e-63 248.4 232 56.9
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 6.6e-63 245.7 191 62.3
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 3.4e-59 233.4 383 36.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-46 191.8 145 64.1
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.5e-46 191.4 150 59.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.4e-41 174.1 418 29.4
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 6.2e-37 159.5 129 60.5
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.5e-35 154.8 455 27.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.2e-24 118.6 73 67.1
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 7.3e-22 109.4 93 57.0
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 9.9e-19 99.0 427 26.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 6.9e-12 76.3 53 62.3
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.2e-11 75.5 75 46.7
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-11 74.7 43 69.8
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 4.3e-06 57.0 33 72.7


User provided reference genes

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