Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.6e-220 769.2 408 100.0
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 2.8e-201 705.3 408 90.7
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.3e-166 590.1 354 88.1
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 4.2e-165 585.1 415 76.9
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.3e-163 580.1 417 76.3
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.7e-163 579.7 413 76.5
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.5e-162 576.6 413 76.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.1e-160 570.5 413 75.5
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.4e-160 569.3 414 75.6
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 8.4e-158 560.8 411 74.5
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.4e-157 560.1 419 73.7
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 2.1e-153 546.2 415 72.3
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.8e-145 518.5 413 68.8
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 4.8e-145 518.5 413 68.8
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.1e-141 507.3 412 67.5
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.5e-141 506.1 411 65.2
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 7.9e-140 501.1 411 67.6
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.8e-139 500.0 408 65.9
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 6.2e-137 491.5 412 64.3
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.1e-136 489.2 412 64.8
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 5.3e-136 488.4 412 65.0
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 2.0e-135 486.5 409 65.5
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 2.2e-134 483.0 413 63.7
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 8.4e-134 481.1 414 64.7
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 3.9e-131 472.2 408 63.7
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 5.1e-131 471.9 408 63.0
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 3.3e-130 469.2 415 63.9
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 8.2e-129 464.5 455 57.6
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.2e-127 460.7 419 61.6
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.0e-126 457.6 412 62.4
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.2e-126 456.4 412 60.0
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 7.2e-125 451.4 411 60.1
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.4e-123 447.2 412 60.7
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.3e-123 446.4 409 60.4
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.9e-123 445.7 437 58.1
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.5e-122 443.7 410 60.5
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.0e-122 443.4 414 61.1
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 2.5e-122 443.0 411 59.6
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 9.7e-122 441.0 409 61.1
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 2.4e-120 436.4 413 59.8
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 9.1e-120 434.5 412 58.5
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.2e-119 434.1 402 59.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.6e-119 433.0 404 61.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.3e-118 430.6 398 61.3
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.0e-118 428.7 412 59.5
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.1e-117 427.6 378 65.1
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.4e-117 427.2 409 60.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 5.5e-117 425.2 414 58.2
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 7.2e-117 424.9 336 69.9
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.4e-117 424.5 409 59.9
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.2e-116 424.1 412 59.0
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.6e-116 423.7 407 60.2
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.1e-116 423.3 409 59.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 4.7e-116 422.2 401 59.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-115 420.6 426 57.0
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.4e-115 420.6 414 58.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 5.1e-115 418.7 407 59.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.1e-114 417.5 437 56.8
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.8e-113 412.9 416 57.9
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 3.7e-113 412.5 415 56.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.4e-112 409.8 409 57.5
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-111 407.1 419 54.9
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.5e-111 406.0 420 55.2
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 7.7e-111 404.8 414 54.8
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.0e-110 404.4 387 58.7
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.7e-110 403.7 410 57.8
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.7e-110 403.7 410 57.6
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.9e-110 402.9 386 58.5
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.8e-110 402.5 387 58.4
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.0e-110 402.1 361 61.5
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.1e-109 401.0 386 58.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 7.2e-109 398.3 413 56.2
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.2e-108 397.5 355 63.9
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.8e-107 393.7 381 60.4
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.7e-106 388.7 396 56.3
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 9.7e-106 387.9 421 56.3
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.3e-105 387.5 410 55.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 8.2e-105 384.8 405 54.3
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 7.0e-104 381.7 406 53.2
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 7.7e-103 378.3 414 53.9
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 6.5e-102 375.2 406 56.2
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.5e-101 374.0 405 52.6
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.5e-101 374.0 389 53.2
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.9e-101 373.6 377 58.9
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.2e-101 372.5 508 47.2
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.5e-101 372.1 404 52.7
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 9.4e-101 371.3 391 56.5
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.2e-100 370.9 404 54.7
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.6e-100 370.5 405 52.3
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.1e-100 370.2 405 52.3
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.1e-100 370.2 497 47.1
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-99 366.7 405 51.4
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 8.8e-99 364.8 408 50.2
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.2e-98 364.4 399 53.1
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 4.4e-98 362.5 405 51.4
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.7e-97 360.5 405 50.6
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.2e-97 360.1 405 51.1
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.0e-94 351.3 404 49.5
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 5.0e-94 349.0 423 49.4
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 4.7e-92 342.4 435 46.9
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 6.1e-92 342.0 404 49.5
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.7e-87 326.6 326 57.4
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 2.9e-86 323.2 422 46.7
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.8e-80 303.9 369 49.6
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 2.4e-80 303.5 414 47.6
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.9e-78 296.6 379 49.9
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.1e-77 294.7 336 54.8
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.1e-76 290.4 226 70.4
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 2.0e-74 283.9 405 47.7
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 2.4e-72 276.9 294 56.5
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 5.2e-67 259.2 349 46.1
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.5e-61 241.1 356 45.8
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.8e-60 236.9 327 48.3
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 4.7e-60 236.1 359 43.7
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 5.2e-59 232.6 318 48.7
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.4e-56 224.6 444 36.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.2e-55 221.5 240 56.7
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 7.8e-55 218.8 238 52.5
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 8.9e-51 205.3 132 78.8
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.7e-39 167.2 414 33.3
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.6e-36 157.9 169 55.0
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.6e-31 139.8 347 32.9
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.3e-30 137.5 153 49.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.3e-30 137.5 153 49.7
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-29 135.2 99 63.6
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 4.6e-23 113.2 141 46.8
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 2.3e-22 110.9 290 31.7
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.1e-22 109.8 118 51.7
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.6e-20 104.8 98 64.3
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.1e-19 100.5 73 79.5
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.0e-14 85.5 65 67.7
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.0e-14 84.0 168 39.9
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 4.3e-13 80.1 124 41.1
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.6e-12 78.2 39 79.5
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.5e-08 64.3 93 41.9
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 1.2e-07 62.0 88 46.6
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.6e-07 61.6 42 78.6


User provided reference genes

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