Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.4e-56 221.9 107 100.0
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 5.2e-43 177.6 110 80.9
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 3.8e-41 171.4 112 79.5
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 6.6e-38 160.6 94 83.0
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 9.3e-32 140.2 93 72.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.9e-29 132.5 88 73.9
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.9e-29 132.5 109 61.5
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 7.3e-29 130.6 98 61.2
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 7.3e-29 130.6 110 60.9
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 4.0e-27 124.8 85 69.4
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 4.0e-27 124.8 98 64.3
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 2.6e-26 122.1 93 60.2
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 7.6e-26 120.6 91 67.0
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 1.1e-24 116.7 87 64.4
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.1e-24 116.7 86 69.8
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.6e-23 112.8 85 67.1
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 2.7e-23 112.1 94 61.7
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 4.6e-23 111.3 94 57.4
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.3e-22 109.0 78 66.7
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 6.7e-22 107.5 87 60.9
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 6.7e-22 107.5 91 61.5
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 6.7e-22 107.5 87 62.1
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.5e-21 106.3 86 60.5
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 1.9e-21 105.9 94 54.3
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.3e-21 104.8 83 62.7
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.4e-19 99.0 89 55.1
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.3e-19 97.8 83 56.6
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 6.9e-19 97.4 87 58.6
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 6.9e-19 97.4 99 51.5
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.3e-17 93.2 80 57.5
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.2e-17 92.4 76 59.2
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 8.4e-17 90.5 72 61.1
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.4e-16 89.7 94 48.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 3.2e-16 88.6 70 61.4
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.6e-15 86.3 76 57.9
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.6e-15 86.3 76 57.9
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 2.1e-15 85.9 76 53.9
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 2.7e-15 85.5 98 43.9
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.0e-15 84.3 76 55.3
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 7.9e-15 84.0 93 51.6
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 7.9e-15 84.0 93 51.6
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 7.9e-15 84.0 80 55.0
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.0e-14 83.6 94 44.7
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 3.9e-14 81.6 86 47.7
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 3.9e-14 81.6 75 50.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 3.9e-14 81.6 81 50.6
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 5.1e-14 81.3 84 48.8
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 5.1e-14 81.3 80 53.8
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 5.1e-14 81.3 97 44.3
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.7e-14 80.9 76 52.6
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 1.9e-13 79.3 94 44.7
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.5e-13 79.0 86 47.7
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.5e-13 79.0 89 41.6
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.3e-13 78.6 65 60.0
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.3e-13 78.6 88 47.7
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 4.3e-13 78.2 89 47.2
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.3e-13 78.2 93 40.9
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.6e-13 77.8 93 40.9
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 7.4e-13 77.4 79 41.8
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.6e-12 76.3 86 46.5
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.6e-12 76.3 96 41.7
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.1e-12 75.9 93 39.8
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.8e-12 75.5 77 48.1
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.8e-12 74.7 96 40.6
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.2e-12 74.3 97 40.2
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 6.2e-12 74.3 93 43.0
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 6.2e-12 74.3 74 51.4
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 6.2e-12 74.3 110 40.9
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 6.2e-12 74.3 76 48.7
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.1e-11 73.6 107 39.3
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.1e-11 73.6 74 43.2
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.8e-11 72.8 96 40.6
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.8e-11 72.8 85 41.2
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.8e-11 72.8 85 41.2
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 3.1e-11 72.0 95 42.1
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 3.1e-11 72.0 103 40.8
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 6.9e-11 70.9 96 44.8
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 6.9e-11 70.9 94 41.5
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 9.0e-11 70.5 57 63.2
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 9.0e-11 70.5 96 33.3
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.2e-10 70.1 101 38.6
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 2.0e-10 69.3 75 44.0
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 2.0e-10 69.3 65 49.2
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 2.6e-10 68.9 87 40.2
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 2.6e-10 68.9 77 42.9
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 4.5e-10 68.2 86 39.5
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 1.0e-09 67.0 79 45.6
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.3e-09 66.6 80 38.8
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.3e-09 66.6 96 39.6
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.3e-09 66.6 78 41.0
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.7e-09 66.2 83 43.4
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 2.2e-09 65.9 47 70.2
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.9e-09 65.5 87 33.3
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 3.8e-09 65.1 97 40.2
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.8e-09 65.1 93 40.9
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.8e-09 65.1 93 40.9
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 3.8e-09 65.1 92 41.3
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.9e-09 64.7 102 38.2
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 6.5e-09 64.3 47 70.2
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 6.5e-09 64.3 108 35.2
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 8.4e-09 63.9 80 43.8
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 8.4e-09 63.9 89 39.3
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.1e-08 63.5 78 43.6
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.4e-08 63.2 99 39.4
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 1.9e-08 62.8 79 41.8
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.5e-08 62.4 59 47.5
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 2.5e-08 62.4 72 47.2
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 2.5e-08 62.4 87 41.4
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 2.5e-08 62.4 73 42.5
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 3.2e-08 62.0 96 36.5
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 3.2e-08 62.0 78 43.6
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 4.2e-08 61.6 82 40.2
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 4.2e-08 61.6 84 39.3
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.2e-08 61.6 75 41.3
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 5.5e-08 61.2 75 41.3
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 7.1e-08 60.8 99 42.4
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 7.1e-08 60.8 102 36.3
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 1.2e-07 60.1 80 45.0
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 1.2e-07 60.1 80 45.0
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 1.2e-07 60.1 80 45.0
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 1.2e-07 60.1 74 43.2
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.6e-07 59.7 92 39.1
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 2.1e-07 59.3 79 43.0
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 2.1e-07 59.3 71 46.5
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 2.1e-07 59.3 79 43.0
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 2.1e-07 59.3 71 46.5
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 2.1e-07 59.3 96 36.5
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 2.1e-07 59.3 91 37.4
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 3.5e-07 58.5 85 36.5
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 4.6e-07 58.2 71 46.5
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 4.6e-07 58.2 71 46.5
Medtr3g116395 Medicago truncatula HOM05D007227 ORTHO05D002252 4.6e-07 58.2 47 66.0
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 4.6e-07 58.2 92 37.0
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 6.0e-07 57.8 79 41.8
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 6.0e-07 57.8 82 41.5
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 6.0e-07 57.8 94 37.2
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 7.9e-07 57.4 62 40.3
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 7.9e-07 57.4 73 43.8
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 7.9e-07 57.4 71 43.7
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 1.0e-06 57.0 89 38.2
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 1.0e-06 57.0 91 36.3
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 1.0e-06 57.0 75 44.0
CARHR039300 Cardamine hirsuta HOM05D009461 ORTHO05D002252 1.3e-06 56.6 71 43.7
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.3e-06 56.6 99 36.4
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.3e-06 56.6 82 40.2
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.3e-06 56.6 93 36.6
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.8e-06 56.2 93 35.5
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 1.8e-06 56.2 71 43.7
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 1.8e-06 56.2 75 44.0
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 2.3e-06 55.8 79 40.5
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 2.3e-06 55.8 85 38.8
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.3e-06 55.8 93 35.5
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 3.0e-06 55.5 79 41.8
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.0e-06 55.5 84 39.3
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 3.9e-06 55.1 79 40.5
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 3.9e-06 55.1 79 40.5
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 3.9e-06 55.1 100 35.0
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 5.1e-06 54.7 80 41.2
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.1e-06 54.7 97 35.1
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.1e-06 54.7 82 39.0
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 5.1e-06 54.7 93 35.5
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 5.1e-06 54.7 86 40.7
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 5.1e-06 54.7 99 40.4
A08p04090 Brassica napus HOM05D009461 ORTHO05D002252 6.7e-06 54.3 79 40.5
BraA08t32434Z Brassica rapa HOM05D009461 ORTHO05D002252 6.7e-06 54.3 79 40.5
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 6.7e-06 54.3 85 40.0
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 8.7e-06 53.9 54 51.9


User provided reference genes

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