Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 2.4e-69 265.4 135 100.0
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 2.2e-30 136.0 82 90.2
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 7.8e-28 127.5 83 86.7
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.3e-25 120.2 81 80.2
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 7.6e-23 110.9 79 75.9
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 7.6e-23 110.9 79 75.9
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 6.4e-22 107.8 85 69.4
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 6.7e-19 97.8 85 67.1
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 8.7e-19 97.4 79 72.2
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 1.5e-18 96.7 79 70.9
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.9e-18 96.3 79 67.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.9e-18 96.3 85 65.9
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 2.1e-17 92.8 79 64.6
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 5.3e-16 88.2 80 63.8
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 6.4e-14 81.3 107 46.7
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.1e-12 76.3 83 56.6
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 2.1e-12 76.3 69 60.9
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 6.0e-12 74.7 84 53.6
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 7.9e-12 74.3 84 54.8
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.0e-11 73.9 83 57.8
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.3e-11 73.6 83 59.0
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.3e-11 72.8 88 50.0
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 3.0e-11 72.4 84 52.4
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 6.7e-11 71.2 88 50.0
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.7e-11 71.2 86 51.2
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 6.7e-11 71.2 88 50.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.7e-11 70.9 80 50.0
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.7e-11 70.9 80 50.0
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 8.7e-11 70.9 80 50.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.1e-10 70.5 86 51.2
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.1e-10 70.5 89 48.3
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.1e-10 70.5 89 48.3
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.9e-10 69.7 84 50.0
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.9e-10 69.7 81 54.3
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.9e-10 69.7 86 51.2
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.5e-10 69.3 85 52.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 2.5e-10 69.3 74 54.1
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.5e-10 69.3 86 50.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.5e-10 69.3 92 46.7
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.3e-10 68.9 87 49.4
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 3.3e-10 68.9 83 50.6
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 3.3e-10 68.9 83 54.2
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.3e-10 68.6 88 53.4
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 5.6e-10 68.2 85 50.6
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 5.6e-10 68.2 86 50.0
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 7.4e-10 67.8 92 47.8
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 7.4e-10 67.8 88 53.4
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 7.4e-10 67.8 75 50.7
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 7.4e-10 67.8 86 54.7
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 9.6e-10 67.4 84 48.8
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.3e-09 67.0 92 47.8
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.3e-09 67.0 86 54.7
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.3e-09 67.0 86 54.7
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.3e-09 67.0 83 53.0
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.6e-09 66.6 87 49.4
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.6e-09 66.6 121 43.0
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 1.6e-09 66.6 84 47.6
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.6e-09 66.6 84 50.0
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.1e-09 66.2 83 50.6
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 2.8e-09 65.9 87 49.4
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 4.8e-09 65.1 88 48.9
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 6.2e-09 64.7 83 53.0
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 8.2e-09 64.3 82 50.0
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 8.2e-09 64.3 73 52.1
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 8.2e-09 64.3 92 53.3
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 8.2e-09 64.3 87 47.1
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.1e-08 63.9 83 49.4
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.4e-08 63.5 83 49.4
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 1.4e-08 63.5 115 41.7
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.4e-08 62.8 77 53.2
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 2.4e-08 62.8 76 50.0
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 2.4e-08 62.8 86 48.8
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.1e-08 62.4 85 45.9
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 4.0e-08 62.0 83 54.2
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 4.0e-08 62.0 82 50.0
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 5.3e-08 61.6 80 48.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 6.9e-08 61.2 91 45.1
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 6.9e-08 61.2 87 47.1
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 9.0e-08 60.8 83 49.4
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.5e-07 60.1 80 45.0
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.5e-07 60.1 86 47.7
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 2.0e-07 59.7 83 43.4
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 2.0e-07 59.7 89 48.3
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 2.0e-07 59.7 81 49.4
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 2.0e-07 59.7 40 72.5
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 2.0e-07 59.7 85 47.1
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.6e-07 59.3 85 50.6
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 3.4e-07 58.9 46 67.4
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.5e-07 58.5 127 39.4
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 4.5e-07 58.5 80 45.0
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 4.5e-07 58.5 80 45.0
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 5.8e-07 58.2 82 43.9
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 5.8e-07 58.2 89 46.1
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 7.6e-07 57.8 80 45.0
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 7.6e-07 57.8 46 67.4
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 7.6e-07 57.8 80 43.8
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 7.6e-07 57.8 79 44.3
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 1.3e-06 57.0 97 43.3
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.2e-06 56.2 82 46.3
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 3.8e-06 55.5 84 46.4
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 3.8e-06 55.5 117 38.5
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 6.5e-06 54.7 85 44.7
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 6.5e-06 54.7 83 42.2


User provided reference genes

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