Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 0.0e+00 1472.2 744 100.0
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 0.0e+00 1245.0 743 86.5
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 0.0e+00 1136.3 744 78.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 0.0e+00 1091.6 749 76.1
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.1e-238 828.2 755 61.5
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 2.6e-213 746.1 755 57.0
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 4.5e-194 682.2 756 53.7
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.3e-180 637.5 752 51.1
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.9e-179 633.6 752 50.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 4.7e-175 619.0 753 50.6
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 6.4e-172 608.6 753 50.6
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 2.0e-165 587.0 747 48.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 2.8e-151 540.0 730 49.2
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.0e-89 335.5 747 34.9
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-87 328.6 755 33.1
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 3.7e-87 327.0 762 33.9
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 7.3e-83 312.8 747 35.1
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 5.2e-81 306.6 748 34.1
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 5.7e-80 303.1 761 33.1
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.9e-79 300.1 753 33.7
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.8e-78 298.1 758 33.9
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 7.0e-78 296.2 750 33.5
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.3e-76 291.2 763 32.4
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.5e-75 288.5 755 32.6
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 4.3e-75 287.0 753 32.8
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 9.5e-75 285.8 753 32.0
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.2e-74 285.4 725 34.1
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.1e-74 284.6 762 32.0
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.7e-71 275.0 755 31.1
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.7e-71 275.0 760 31.3
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.2e-69 268.9 773 32.9
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.3e-68 264.6 760 31.6
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.6e-66 258.5 759 32.8
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.1e-66 258.1 765 31.1
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 2.8e-66 257.7 743 30.6
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.6e-66 257.3 738 31.0
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 3.6e-66 257.3 744 30.6
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.4e-65 255.4 774 30.9
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.8e-65 255.0 741 31.4
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 3.1e-65 254.2 806 29.5
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.0e-64 251.5 398 41.2
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.7e-63 248.4 775 29.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.1e-62 243.8 792 29.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.0e-60 239.2 747 31.3
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 3.0e-60 237.7 730 31.2
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 7.3e-59 233.0 728 31.6
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 9.5e-59 232.6 783 28.6
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 2.6e-56 224.6 773 31.3
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 4.4e-56 223.8 489 36.8
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 6.4e-55 219.9 756 28.6
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 8.4e-55 219.5 746 29.5
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.6e-53 215.3 758 28.1
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.7e-53 214.5 733 31.1
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.7e-53 214.5 719 30.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 7.8e-53 213.0 755 28.2
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.9e-52 210.7 719 30.9
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.4e-49 201.4 493 33.3
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 8.9e-49 199.5 554 31.6
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.2e-48 199.1 495 33.9
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.2e-48 199.1 546 31.5
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.4e-46 191.4 410 34.9
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 7.1e-46 189.9 621 28.8
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-44 184.9 463 33.9
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 7.3e-43 179.9 501 33.3
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.1e-41 176.0 420 36.2
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.1e-41 174.5 403 32.8
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.2e-40 172.6 565 32.4
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.0e-40 171.8 467 31.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 8.4e-39 166.4 405 34.1
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.9e-38 165.2 429 34.0
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 7.1e-38 163.3 433 31.9
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.1e-37 161.8 385 36.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 3.5e-37 161.0 433 31.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 6.0e-37 160.2 433 31.9
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.7e-36 158.7 452 31.6
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.0e-36 157.9 492 28.7
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 6.6e-36 156.8 779 27.3
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.1e-35 156.0 475 30.7
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.4e-33 148.3 510 28.2
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 7.6e-32 143.3 502 29.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.2e-29 136.0 391 31.7
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.8e-28 132.1 323 36.8
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.5e-27 129.0 393 29.3
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.5e-27 128.3 388 31.7
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 4.3e-27 127.5 477 28.9
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 9.6e-27 126.3 496 28.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.3e-26 125.9 387 30.5
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 4.8e-26 124.0 500 27.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 8.1e-26 123.2 494 28.3
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 2.4e-25 121.7 350 32.0
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.4e-25 121.7 340 33.5
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.2e-24 119.4 449 28.5
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.0e-24 118.6 396 29.5
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.6e-24 118.2 543 25.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 3.4e-24 117.9 390 30.8
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.4e-24 117.9 344 32.3
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 3.4e-24 117.9 390 30.8
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 3.4e-24 117.9 390 30.8
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.4e-24 117.9 344 32.3
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 5.8e-24 117.1 336 32.1
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-23 115.9 341 32.6
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.3e-23 115.9 341 32.6
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 1.3e-23 115.9 411 29.7
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 3.8e-23 114.4 390 30.0
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 3.8e-23 114.4 402 29.6
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 6.5e-23 113.6 453 27.8
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 6.5e-23 113.6 376 31.4
VMungo0251G2908 Vigna mungo HOM05D007001 ORTHO05D035952 1.9e-22 112.1 61 85.2
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 3.2e-22 111.3 346 31.8
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.2e-22 111.3 225 34.7
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 5.5e-22 110.5 377 31.0
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 9.3e-22 109.8 392 29.6
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.1e-21 108.6 403 28.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 6.7e-20 103.6 219 35.2
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-19 102.1 200 37.5
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.1e-18 98.6 233 36.1
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.8e-18 98.2 363 29.5
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 3.4e-16 91.3 228 32.9
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 4.5e-16 90.9 327 30.0
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 2.7e-13 81.6 225 32.9
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 5.1e-12 77.4 394 23.9
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.6e-10 72.4 191 36.1
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-10 72.0 326 28.8
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 2.2e-10 72.0 326 28.8
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.6e-08 65.1 82 43.9
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.4e-08 64.7 200 32.5
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.0e-07 63.2 249 28.1
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-07 63.2 79 45.6
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.1e-06 59.7 390 24.1
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.4e-06 59.3 222 30.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-06 58.9 256 25.4


User provided reference genes

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