Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.8e-140 501.5 259 100.0
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.2e-133 479.9 259 94.6
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 6.1e-130 467.6 259 91.5
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 2.8e-127 458.8 259 89.6
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.4e-121 439.9 259 86.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 6.8e-121 437.6 259 86.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 3.4e-120 435.3 259 84.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 4.1e-118 428.3 256 84.0
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 3.5e-117 425.2 261 83.1
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.1e-115 420.2 251 84.1
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.3e-115 418.7 261 81.2
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 7.3e-115 417.5 257 79.0
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.2e-114 416.8 257 78.6
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.8e-114 415.6 257 79.0
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 3.6e-114 415.2 257 80.5
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 2.6e-112 409.1 259 78.0
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.4e-112 408.7 256 78.9
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 3.7e-111 405.2 257 78.2
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 3.7e-111 405.2 259 78.0
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.1e-110 401.7 255 77.3
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 5.4e-110 401.4 259 76.8
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 9.2e-110 400.6 258 76.4
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.6e-109 399.8 255 76.5
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 3.5e-109 398.7 259 76.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.5e-109 398.7 259 76.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 3.5e-109 398.7 254 77.6
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 4.6e-109 398.3 255 77.6
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.0e-108 397.1 259 75.3
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.3e-108 396.7 259 74.5
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.3e-108 396.7 259 74.5
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.0e-108 395.6 259 74.9
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 5.1e-108 394.8 258 74.8
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 8.6e-108 394.0 256 75.0
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.3e-107 391.7 261 75.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 4.3e-107 391.7 259 72.2
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 9.5e-107 390.6 259 73.4
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.6e-106 388.7 259 74.9
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 4.7e-106 388.3 296 67.9
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 8.1e-106 387.5 254 76.4
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.1e-105 387.1 259 75.3
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.8e-105 386.3 255 76.1
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.8e-105 386.3 255 75.3
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 4.0e-105 385.2 255 74.9
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 8.9e-105 384.0 255 72.9
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.6e-104 382.5 257 74.3
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 7.5e-104 380.9 264 72.3
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.7e-103 378.6 255 72.5
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 6.4e-103 377.9 253 73.1
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.9e-102 376.3 255 71.0
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.2e-102 375.6 255 70.6
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 4.1e-102 375.2 255 71.8
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 4.1e-102 375.2 265 71.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 5.4e-102 374.8 255 71.0
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 9.2e-102 374.0 267 70.8
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.1e-101 372.9 225 83.1
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.7e-101 372.5 251 73.3
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 6.0e-101 371.3 296 65.5
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.7e-100 369.8 255 70.2
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.0e-100 369.0 281 68.0
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 3.0e-100 369.0 256 71.1
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 3.9e-100 368.6 254 71.3
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.1e-100 368.2 312 62.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 8.6e-100 367.5 257 69.6
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.1e-99 367.1 259 72.2
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-99 365.9 256 69.5
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 5.6e-99 364.8 257 68.9
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 5.6e-99 364.8 255 69.0
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-98 363.2 256 68.8
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.1e-98 362.8 284 67.3
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 4.7e-98 361.7 292 64.4
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 2.4e-97 359.4 251 69.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.0e-92 344.0 257 69.6
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 5.1e-92 341.7 260 68.1
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.6e-90 336.7 259 67.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.1e-90 336.3 227 74.9
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 4.0e-89 332.0 256 67.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.2e-88 330.5 256 67.6
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.8e-85 317.8 221 74.2
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 5.1e-84 315.1 279 60.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.3e-82 310.5 220 70.0
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.5e-80 303.5 212 74.1
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 2.7e-77 292.7 197 73.1
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 6.0e-77 291.6 255 54.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.0e-76 290.8 251 62.9
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.0e-76 289.3 262 59.5
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 6.7e-76 288.1 259 61.0
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 2.5e-75 286.2 257 54.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 5.6e-75 285.0 253 62.1
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.6e-75 284.3 224 63.8
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-74 283.9 224 63.8
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-74 283.9 224 63.4
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.1e-74 283.1 198 68.7
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 8.1e-74 281.2 184 76.6
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 5.3e-73 278.5 169 81.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.4e-72 275.8 254 55.5
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.5e-72 275.4 254 55.5
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.3e-71 273.9 254 55.1
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.0e-69 265.0 214 65.9
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.7e-68 261.2 163 79.1
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.4e-67 258.1 254 53.5
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.8e-65 253.4 260 53.5
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.6e-61 238.8 207 60.4
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.4e-54 217.2 172 62.8
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.1e-51 207.6 191 60.7
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.8e-50 202.2 134 71.6
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.8e-42 176.4 136 65.4
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.2e-42 174.9 134 68.7
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 3.5e-40 169.5 144 63.2
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.2e-37 161.0 186 48.4
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 8.8e-36 154.8 248 35.1
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.3e-34 151.0 185 46.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.1e-30 137.9 225 40.4
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 5.5e-30 135.6 182 44.5
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.4e-28 131.0 104 67.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-27 126.3 211 39.8
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 3.4e-27 126.3 208 40.4
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 5.7e-27 125.6 244 32.8
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 7.5e-27 125.2 252 32.5
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-26 124.4 206 39.8
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.7e-26 124.0 79 83.5
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 3.7e-26 122.9 144 50.0
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 3.5e-24 116.3 73 71.2
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 5.2e-20 102.4 90 54.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 4.5e-16 89.4 61 67.2
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 8.6e-15 85.1 151 37.1
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.3e-14 83.2 48 79.2
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 4.2e-14 82.8 48 79.2
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 7.2e-14 82.0 48 75.0
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 9.5e-14 81.6 78 52.6
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 9.5e-14 81.6 61 60.7
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 3.0e-12 76.6 128 36.7
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 4.0e-12 76.3 48 66.7
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.2e-08 64.7 57 57.9
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 2.0e-08 63.9 52 55.8
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 3.5e-08 63.2 147 32.0
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.0e-07 61.6 39 66.7
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.3e-06 56.6 160 30.0


User provided reference genes

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