Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 6.2e-82 307.4 152 100.0
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 7.2e-62 240.7 158 77.8
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 5.0e-55 218.0 156 71.8
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 6.5e-55 217.6 155 72.9
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.5e-54 214.5 155 72.3
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.0e-52 210.3 156 67.9
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 2.3e-52 209.1 155 67.1
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 3.3e-51 205.3 155 69.7
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 7.4e-51 204.1 153 68.0
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.2e-50 202.6 157 67.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.5e-48 196.4 157 66.9
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.0e-47 193.7 159 63.5
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.3e-47 193.4 154 63.6
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.4e-46 189.9 150 63.3
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.9e-46 189.5 159 60.4
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 4.2e-46 188.3 158 60.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 7.2e-46 187.6 158 58.2
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.2e-45 186.8 155 58.1
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.1e-45 186.0 158 57.6
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 4.7e-45 184.9 158 57.6
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.0e-44 183.7 155 57.4
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.4e-44 183.3 158 62.0
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.8e-44 183.0 158 57.6
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 3.0e-44 182.2 144 66.0
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 3.9e-44 181.8 156 61.5
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.1e-43 180.3 157 59.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.5e-43 179.9 155 55.5
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.0e-43 179.5 135 63.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 2.6e-43 179.1 148 58.8
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.4e-43 178.3 138 64.5
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 2.8e-42 175.6 160 54.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 3.7e-42 175.3 146 62.3
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 6.3e-42 174.5 141 61.7
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 6.3e-42 174.5 158 54.4
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.3e-42 174.5 117 69.2
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.4e-41 172.6 118 69.5
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 4.1e-41 171.8 126 68.3
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.1e-41 171.8 146 58.9
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 5.3e-41 171.4 136 58.8
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 5.3e-41 171.4 136 61.8
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 7.0e-41 171.0 143 59.4
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 7.0e-41 171.0 141 58.9
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 7.0e-41 171.0 155 53.5
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 9.1e-41 170.6 140 57.1
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.6e-40 169.9 157 58.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.6e-40 169.1 144 60.4
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.6e-40 169.1 137 59.1
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 2.6e-40 169.1 141 60.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.5e-40 168.7 161 54.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.5e-40 168.7 157 56.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.5e-40 168.3 142 60.6
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 5.9e-40 167.9 155 55.5
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.0e-39 167.2 138 59.4
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.3e-39 166.8 142 58.5
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.3e-39 166.8 142 58.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.3e-39 166.8 140 59.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.3e-39 166.8 139 59.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.7e-39 166.4 145 56.6
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.9e-39 165.6 145 56.6
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.8e-39 165.2 141 58.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 3.8e-39 165.2 114 65.8
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 5.0e-39 164.9 105 71.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 6.5e-39 164.5 152 55.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 6.5e-39 164.5 107 71.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 8.5e-39 164.1 145 57.9
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 8.5e-39 164.1 145 57.9
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 8.5e-39 164.1 145 57.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 8.5e-39 164.1 127 61.4
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-38 163.7 138 58.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.1e-38 163.7 141 57.4
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-38 163.3 140 57.9
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.5e-38 163.3 148 54.1
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.9e-38 162.9 120 63.3
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.9e-38 162.9 156 55.8
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 2.5e-38 162.5 142 55.6
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 2.5e-38 162.5 142 59.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 3.2e-38 162.2 114 64.0
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 4.2e-38 161.8 139 56.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 5.5e-38 161.4 160 51.9
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 7.2e-38 161.0 140 57.9
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 119 63.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.6e-37 159.8 158 54.4
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.7e-37 159.1 142 55.6
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.7e-37 158.3 139 55.4
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 8.0e-37 157.5 140 57.1
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 8.0e-37 157.5 156 52.6
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 8.0e-37 157.5 134 59.0
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 2.3e-36 156.0 150 52.0
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.0e-36 155.6 145 58.6
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 3.0e-36 155.6 134 59.7
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 5.2e-36 154.8 86 72.1
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 6.7e-36 154.5 145 57.9
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 6.7e-36 154.5 144 52.8
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.5e-35 153.3 124 60.5
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.5e-35 153.3 133 58.6
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-35 152.9 164 49.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-35 152.9 139 54.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.6e-35 152.5 138 52.9
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.6e-35 152.5 139 54.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 4.4e-35 151.8 95 71.6
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.4e-35 151.8 122 60.7
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 7.5e-35 151.0 84 77.4
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.7e-35 150.6 132 56.8
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.7e-35 150.6 84 78.6
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.7e-34 149.8 121 61.2
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.2e-34 149.4 79 77.2
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 4.8e-34 148.3 81 79.0
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 6.3e-34 147.9 85 76.5
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 103 64.1
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.8e-33 146.4 147 49.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.3e-33 144.8 132 53.8
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 2.7e-32 142.5 73 82.2
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 9.4e-30 134.0 122 53.3
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-28 130.6 162 46.3
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.0e-28 129.0 129 48.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.5e-27 126.7 135 51.1
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 3.4e-27 125.6 153 47.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 3.4e-27 125.6 129 49.6
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 7.5e-27 124.4 140 50.0
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.4e-25 120.2 88 64.8
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 9.1e-25 117.5 111 55.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.0e-23 114.0 111 52.3
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 8.5e-23 110.9 54 85.2
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.5e-22 110.2 52 88.5
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.2e-22 108.6 81 67.9
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.3e-20 102.8 77 55.8
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 2.3e-20 102.8 118 49.2
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 4.0e-20 102.1 66 65.2
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 8.8e-20 100.9 162 40.1
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 8.8e-20 100.9 93 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.5e-19 100.1 85 55.3
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 4.4e-19 98.6 82 62.2
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 2.4e-17 92.8 100 46.0
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.5e-14 83.6 67 58.2
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 8.9e-12 74.3 135 37.8
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.2e-11 73.9 100 41.0
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 3.4e-11 72.4 76 42.1
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 1.1e-09 67.4 76 50.0
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.6e-08 63.5 41 63.4
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.7e-08 62.8 46 54.3
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.6e-08 62.0 45 55.6
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.0e-07 60.8 59 49.2


User provided reference genes

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