Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.6e-303 1044.6 549 100.0
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 1.2e-281 972.6 549 93.6
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 8.4e-262 906.7 554 85.4
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 9.3e-253 876.7 556 83.5
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.1e-237 826.6 560 78.8
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.9e-229 799.3 548 77.2
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 1.7e-225 786.2 550 75.6
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 2.4e-224 782.3 553 76.3
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 7.2e-213 744.2 550 72.7
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 8.0e-204 714.1 549 68.3
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 8.8e-203 710.7 551 67.9
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 9.7e-202 707.2 555 68.1
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 2.4e-200 702.6 550 68.4
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 4.1e-200 701.8 560 67.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 2.7e-199 699.1 560 67.1
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.0e-198 697.2 557 66.8
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.7e-198 696.4 552 68.5
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.7e-198 696.4 552 68.5
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 8.5e-198 694.1 556 66.9
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.5e-197 693.3 556 65.3
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.9e-197 693.0 557 66.6
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 3.2e-197 692.2 553 67.1
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 7.2e-197 691.0 549 67.9
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.7e-196 689.1 562 66.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 3.6e-196 688.7 553 65.1
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 4.7e-196 688.3 541 67.3
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.0e-195 687.2 562 66.4
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.8e-195 686.4 544 66.4
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.3e-195 686.0 552 68.1
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.0e-195 685.6 552 68.1
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 3.0e-195 685.6 558 66.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 3.0e-195 685.6 572 65.4
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 5.2e-195 684.9 546 66.3
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 8.8e-195 684.1 560 67.3
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 1.5e-194 683.3 558 64.7
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 2.6e-194 682.6 524 70.4
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.4e-194 682.2 555 65.4
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 4.4e-194 681.8 548 64.1
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 4.4e-194 681.8 543 64.8
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 5.7e-194 681.4 556 65.8
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.3e-193 680.2 558 65.2
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.3e-193 680.2 552 67.4
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.7e-193 679.9 562 66.4
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.7e-193 678.7 557 63.9
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 4.8e-193 678.3 557 63.9
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.8e-193 678.3 557 63.4
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 8.3e-193 677.6 549 65.8
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 8.3e-193 677.6 559 65.7
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 3.1e-192 675.6 551 65.7
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.1e-192 675.6 556 65.6
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.1e-192 675.6 555 66.1
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.6e-191 673.3 542 66.2
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.7e-191 672.5 545 66.6
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.5e-191 672.2 549 64.7
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 3.5e-191 672.2 545 67.0
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 5.9e-191 671.4 547 66.2
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.3e-190 670.2 556 62.2
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.3e-190 670.2 526 67.1
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.7e-190 669.8 546 63.9
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 2.9e-190 669.1 546 67.2
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 6.6e-190 667.9 573 64.4
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.3e-189 665.6 555 64.9
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 7.2e-189 664.5 535 65.4
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 9.5e-189 664.1 535 65.2
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.6e-188 663.3 535 65.2
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.6e-188 663.3 536 64.9
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 2.1e-188 662.9 535 65.0
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 3.6e-188 662.1 560 65.0
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.7e-188 661.8 534 63.9
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 8.0e-188 661.0 534 64.2
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.8e-187 659.8 570 62.8
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.3e-187 659.4 532 67.5
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 4.0e-187 658.7 586 61.8
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 7.5e-186 654.4 533 64.5
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 2.2e-185 652.9 608 59.5
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.2e-185 652.9 542 64.4
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.1e-184 650.6 567 62.6
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 5.4e-184 648.3 446 76.2
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 3.5e-183 645.6 548 64.4
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 5.9e-183 644.8 562 63.7
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 2.3e-182 642.9 546 62.5
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.3e-182 642.9 545 62.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 2.9e-182 642.5 550 64.5
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 3.8e-182 642.1 542 62.0
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 8.6e-182 641.0 545 62.4
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.9e-181 639.8 538 63.0
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 2.3e-179 632.9 553 62.6
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 5.8e-178 628.2 562 61.2
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 4.9e-177 625.2 466 68.2
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 8.3e-177 624.4 559 61.7
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 4.1e-176 622.1 572 60.7
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 7.0e-176 621.3 537 62.2
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.7e-175 619.4 546 62.3
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.1e-171 607.4 486 65.0
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.6e-164 582.4 579 57.2
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 3.9e-150 535.8 508 60.4
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.9e-144 516.9 589 49.4
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.1e-132 476.9 498 56.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 8.1e-132 474.9 394 66.0
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 6.4e-129 465.3 535 51.4
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 3.9e-126 456.1 473 53.1
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 5.8e-122 442.2 463 55.3
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.9e-112 410.6 352 64.2
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 2.1e-111 407.1 352 63.6
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.1e-111 407.1 337 64.4
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.1e-109 401.4 355 61.1
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.8e-108 396.7 297 68.7
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.4e-107 393.7 304 67.8
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.2e-105 387.1 304 68.4
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 3.8e-105 386.3 388 53.9
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 7.9e-103 378.6 338 60.4
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.0e-102 378.3 518 43.2
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.6e-101 373.6 395 53.9
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 3.7e-100 369.8 309 64.1
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 7.0e-99 365.5 269 72.9
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.3e-97 361.3 309 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 2.0e-90 337.4 553 36.7
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.0e-90 337.4 578 37.2
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.6e-79 301.2 580 35.9
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 4.4e-77 293.1 283 59.0
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.2e-66 258.5 165 77.0
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 9.5e-56 222.2 263 52.9
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 8.9e-54 215.7 147 82.3
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 2.4e-51 207.6 172 64.5
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.5e-48 197.6 554 30.1
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 9.5e-48 195.7 181 53.6
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 8.9e-38 162.5 125 68.8
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 4.2e-35 153.7 87 86.2
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.6e-34 151.8 356 27.2
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.1e-34 151.4 450 26.7
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.6e-29 134.4 105 67.6
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.4e-27 126.7 86 74.4
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 5.1e-25 120.2 560 25.2
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 6.6e-25 119.8 588 24.7
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.5e-24 118.6 387 25.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.1e-22 110.9 153 47.7
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.1e-19 102.4 133 45.9
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.5e-16 91.3 442 22.4
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 4.8e-15 87.0 508 21.5
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 3.8e-12 77.4 49 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 2.1e-10 71.6 230 30.4
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 5.7e-08 63.5 85 51.8
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 4.8e-07 60.5 253 23.7
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 3.1e-06 57.8 44 61.4
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 4.1e-06 57.4 217 24.9
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 4.1e-06 57.4 227 25.6
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 6.9e-06 56.6 216 24.5
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 6.9e-06 56.6 219 26.0


User provided reference genes

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