Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 0.0e+00 1163.3 568 100.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 0.0e+00 1108.6 568 92.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 0.0e+00 1108.2 565 93.1
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1090.1 568 91.4
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 0.0e+00 1087.4 568 90.1
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 0.0e+00 1084.3 568 90.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1078.9 568 90.8
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 0.0e+00 1075.5 568 89.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.9e-312 1074.7 568 89.8
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.9e-312 1074.3 568 90.1
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 3.9e-312 1073.9 568 89.8
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 7.8e-312 1073.2 568 89.6
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 568 88.4
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 9.8e-306 1052.7 568 88.0
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 568 87.5
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 4.9e-305 1050.4 568 87.1
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 568 88.0
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 7.0e-304 1046.6 568 87.3
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 7.0e-304 1046.6 568 87.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 564 87.1
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 568 86.8
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 568 86.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.3e-302 1041.6 568 86.8
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 568 87.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 568 86.6
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 561 87.5
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 567 85.9
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 563 87.9
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 561 87.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 557 87.6
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 561 87.2
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 567 86.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 563 87.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 2.3e-299 1031.6 571 86.3
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 568 85.4
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.5e-298 1028.9 563 87.4
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 568 85.9
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 563 86.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 565 85.7
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 567 86.4
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 568 85.6
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 568 85.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 561 86.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 563 86.3
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 561 86.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 563 86.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 563 87.2
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 563 87.2
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.8e-296 1021.9 563 85.8
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 563 85.8
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 9.2e-296 1019.6 568 85.6
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 9.2e-296 1019.6 568 85.4
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 568 85.4
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 567 85.5
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 6.6e-294 1013.4 568 84.9
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 8.6e-294 1013.1 565 85.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 561 85.0
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 562 86.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.2e-292 1009.2 567 84.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 566 84.5
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 567 84.8
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 563 84.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.2e-291 1003.8 568 83.6
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 568 83.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 565 82.7
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 561 84.7
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 563 84.9
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 5.8e-290 1000.3 568 84.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.3e-289 999.2 565 82.3
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.2e-289 998.4 565 83.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.4e-288 995.0 569 83.0
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.2e-287 992.6 552 84.8
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.0e-287 991.9 565 82.8
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.6e-287 990.7 562 83.1
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.0e-287 990.3 549 85.1
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.7e-286 988.8 564 83.2
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.3e-286 988.4 564 83.7
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.0e-286 988.0 550 84.7
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.9e-286 987.6 551 85.3
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 5.0e-286 987.3 564 83.5
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 564 83.5
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 564 83.5
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 564 83.5
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 5.0e-286 987.3 564 83.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-285 986.1 549 84.7
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.5e-285 984.9 564 83.3
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.5e-285 984.9 571 82.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.5e-285 984.9 564 83.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.3e-285 984.2 564 83.2
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-285 983.8 564 83.2
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 5.6e-285 983.8 564 83.2
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 9.5e-285 983.0 561 83.2
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 9.5e-285 983.0 557 84.2
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 9.5e-285 983.0 565 83.0
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.1e-284 981.9 550 84.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 82.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 82.6
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 82.6
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 83.5
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 83.5
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 6.2e-284 980.3 556 83.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 4.0e-283 977.6 564 82.6
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.0e-282 975.3 564 83.2
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 82.3
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 81.9
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 82.3
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.7e-281 972.2 568 82.7
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.2e-281 971.8 534 86.1
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.9e-281 971.5 570 82.6
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.2e-280 966.5 567 82.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.2e-280 966.5 564 81.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 7.3e-277 956.8 564 80.7
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 8.1e-276 953.4 564 80.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.2e-274 949.5 564 79.1
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.2e-274 949.5 562 81.0
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.9e-273 944.9 568 78.3
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.4e-273 943.3 564 78.5
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.9e-272 942.2 562 80.6
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.5e-271 937.9 564 78.5
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.0e-270 936.4 568 77.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.9e-266 919.8 563 80.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-264 915.6 564 79.1
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-263 912.9 524 83.4
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.6e-263 912.5 565 75.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.7e-263 911.8 571 75.1
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.0e-263 910.6 571 75.0
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-261 904.8 568 74.8
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.6e-261 904.0 570 75.6
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 3.6e-260 901.4 570 74.9
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.9e-253 879.0 565 73.1
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 3.7e-252 874.8 574 71.8
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.2e-250 869.8 565 73.5
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.3e-246 856.3 551 73.5
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 3.9e-246 854.7 557 76.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 9.6e-245 850.1 569 72.2
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 5.3e-243 844.3 568 72.2
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 9.0e-243 843.6 566 71.6
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.3e-236 823.2 418 93.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.6e-236 822.8 564 70.0
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.2e-233 812.4 469 80.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.0e-210 736.1 563 66.3
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.9e-208 729.6 425 80.9
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 4.2e-208 728.4 567 65.1
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.0e-186 656.4 373 81.0
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.6e-178 630.2 541 55.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.3e-168 595.9 329 84.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.8e-167 592.8 417 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.2e-167 591.7 488 56.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.0e-165 586.6 523 53.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 8.4e-156 554.7 292 86.6
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.4e-147 526.6 418 59.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.0e-138 495.4 567 49.7
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-135 487.3 568 49.3
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.9e-128 463.8 319 70.8
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.4e-128 461.8 468 55.6
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.4e-88 329.7 213 76.1
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 7.5e-88 328.9 549 39.3
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 4.7e-82 309.7 493 35.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-67 261.2 197 65.5
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-66 257.7 197 64.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 5.4e-62 243.0 166 69.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.8e-50 204.1 132 76.5
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.2e-48 198.7 133 73.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.7e-47 193.7 128 75.0
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.2e-42 178.7 122 67.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-41 174.5 166 56.6
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 8.9e-41 172.6 166 56.6
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-40 171.8 166 56.6
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.7e-39 168.3 166 56.0
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.7e-37 161.0 317 31.2
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.1e-34 151.4 497 27.8
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.9e-31 141.0 87 74.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-29 133.3 213 39.0
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.5e-27 127.9 95 63.2
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 5.6e-27 126.7 85 64.7
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.6e-26 125.2 76 72.4
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 9.3e-22 109.4 184 39.7
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.1e-19 102.4 103 49.5
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-19 100.1 166 41.0
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 5.1e-12 77.0 46 67.4
Lalb_Chr01g0000571 Lupinus albus HOM05D000597 ORTHO05D000603 1.9e-06 58.5 153 28.1
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.5e-06 57.0 72 51.4


User provided reference genes

Program Settings