Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.4e-200 701.4 352 100.0
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 4.1e-185 651.4 354 92.4
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 6.1e-173 610.9 354 86.2
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 1.6e-168 596.3 355 84.5
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 1.0e-167 593.6 352 84.9
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 2.9e-167 592.0 360 83.1
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 8.5e-167 590.5 361 83.1
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 5.7e-163 577.8 360 81.9
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 2.8e-162 575.5 354 81.6
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 3.7e-162 575.1 361 81.4
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 1.8e-161 572.8 355 82.5
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 9.1e-161 570.5 336 84.8
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 1.8e-153 546.2 360 78.6
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 3.5e-152 542.0 353 75.6
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 1.7e-151 539.7 356 77.8
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 4.2e-150 535.0 405 69.9
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.2e-149 533.5 353 74.2
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.6e-149 533.1 355 74.6
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.0e-148 530.4 352 74.4
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 4.0e-148 528.5 352 73.9
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 5.2e-148 528.1 352 74.4
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 8.9e-148 527.3 352 74.4
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 1.2e-147 526.9 355 73.2
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 5.7e-147 524.6 353 72.0
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 7.5e-147 524.2 354 73.4
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 7.5e-147 524.2 353 72.8
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.4e-145 520.0 354 71.5
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 5.4e-145 518.1 354 72.0
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 9.2e-145 517.3 354 72.3
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.2e-144 516.9 354 71.8
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.3e-143 513.5 355 71.3
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 2.9e-143 512.3 353 70.8
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 5.0e-143 511.5 354 69.5
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 1.5e-142 510.0 355 71.3
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.9e-142 509.6 352 70.5
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.9e-142 509.6 355 71.8
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.8e-141 505.8 355 71.8
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 4.7e-141 505.0 353 71.7
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 6.2e-141 504.6 352 69.3
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 1.4e-140 503.4 354 69.8
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 2.3e-140 502.7 354 68.4
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 4.0e-140 501.9 336 71.7
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.5e-139 500.0 354 68.1
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 3.4e-139 498.8 355 71.5
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 1.3e-138 496.9 354 68.4
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.3e-138 496.9 354 67.5
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 2.9e-138 495.7 353 70.0
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 3.2e-137 492.3 328 72.9
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 4.1e-137 491.9 330 71.8
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 1.6e-136 490.0 272 88.2
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.3e-135 486.1 356 69.4
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.0e-135 485.7 352 68.8
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 8.6e-135 484.2 352 67.3
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 1.5e-134 483.4 289 78.9
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 3.6e-133 478.8 356 68.8
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.3e-132 476.1 356 68.5
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 5.2e-132 474.9 353 65.7
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 8.9e-132 474.2 293 75.1
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 5.8e-131 471.5 354 65.5
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 5.8e-131 471.5 353 65.2
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 7.5e-131 471.1 354 65.3
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 9.8e-131 470.7 338 67.2
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.3e-130 470.3 316 71.5
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.3e-130 470.3 357 66.1
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 2.4e-129 466.1 352 64.2
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 2.4e-129 466.1 356 65.7
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 7.1e-129 464.5 312 70.2
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 9.2e-129 464.2 359 65.5
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 4.6e-128 461.8 357 63.9
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 2.3e-127 459.5 352 65.9
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.3e-127 459.5 356 64.6
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 3.0e-127 459.1 354 65.0
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 8.6e-127 457.6 356 64.6
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 8.6e-127 457.6 354 66.9
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.5e-126 456.8 331 70.7
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.3e-126 455.7 365 64.7
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.6e-125 453.4 315 68.9
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.8e-125 452.6 310 71.9
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 2.8e-125 452.6 355 62.8
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.4e-124 450.3 365 64.4
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 2.3e-124 449.5 376 62.8
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 4.0e-124 448.7 354 62.4
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 4.4e-123 445.3 311 68.5
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.3e-122 443.7 354 65.3
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 1.7e-122 443.4 311 67.8
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 2.2e-122 443.0 354 63.3
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 2.2e-122 443.0 352 63.4
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 3.7e-122 442.2 297 70.0
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 8.4e-122 441.0 355 62.0
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 1.9e-121 439.9 297 69.7
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 2.4e-121 439.5 308 67.9
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 2.4e-121 439.5 297 69.7
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 2.4e-121 439.5 355 62.3
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 4.1e-121 438.7 308 67.2
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 5.4e-121 438.3 311 67.2
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 5.4e-121 438.3 311 67.2
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 7.1e-121 438.0 308 67.2
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 9.2e-121 437.6 297 69.0
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 2.7e-120 436.0 308 67.2
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.0e-119 432.6 289 69.6
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 6.6e-119 431.4 381 59.1
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 1.1e-118 430.6 355 59.7
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 8.9e-116 421.0 304 65.8
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 1.5e-115 420.2 301 72.4
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.0e-115 419.9 307 70.7
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 5.8e-115 418.3 340 61.2
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 2.9e-114 416.0 359 58.2
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.1e-113 414.1 295 68.5
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.4e-113 412.9 362 60.2
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 6.0e-112 408.3 303 70.0
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 5.1e-111 405.2 333 60.7
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 1.2e-107 394.0 230 81.3
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 1.5e-107 393.7 308 62.3
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 1.3e-106 390.6 364 57.1
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 1.7e-103 380.2 304 65.5
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.7e-98 363.6 304 58.2
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.6e-96 357.1 319 53.6
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 7.9e-96 354.8 290 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.6e-93 347.1 297 54.2
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 5.3e-92 342.0 266 65.0
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.5e-91 340.5 356 50.0
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 3.2e-89 332.8 318 53.1
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.3e-87 326.6 307 54.4
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 1.5e-83 313.9 213 68.5
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.7e-82 310.5 289 55.0
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 4.3e-78 295.8 288 50.0
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 1.0e-71 274.6 156 86.5
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 4.5e-67 259.2 143 88.1
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 5.5e-65 252.3 321 42.1
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 8.8e-55 218.4 268 46.3
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.3e-53 214.5 155 67.7
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 1.2e-51 208.0 144 72.2
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 8.5e-50 201.8 286 46.5
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.1e-49 201.4 123 82.1
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.9e-49 200.7 142 71.8
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.4e-44 184.5 201 50.7
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 1.2e-43 181.4 251 40.6
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 1.1e-41 174.9 299 36.5
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 2.5e-41 173.7 305 37.0
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 2.2e-37 160.6 153 54.2
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 3.5e-27 126.7 109 60.6
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 1.1e-25 121.7 80 70.0
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 5.2e-23 112.8 238 34.0
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.5e-22 111.3 161 44.1
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 9.2e-20 102.1 94 54.3
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.0e-18 96.3 63 68.3
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 3.4e-14 83.6 59 62.7
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 4.1e-12 76.6 56 60.7
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 2.1e-11 74.3 53 62.3
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 4.6e-11 73.2 148 32.4
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 7.8e-11 72.4 41 78.0
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 2.3e-10 70.9 148 31.1
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 8.6e-10 68.9 53 66.0
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.1e-09 68.6 72 51.4
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 2.5e-09 67.4 251 24.3
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 2.1e-08 64.3 35 74.3
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 2.8e-08 63.9 147 28.6
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.4e-07 61.6 147 27.9
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 2.3e-07 60.8 224 23.7
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 3.1e-07 60.5 145 29.0
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 5.2e-07 59.7 147 27.9
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.2e-06 58.5 149 26.2
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 2.6e-06 57.4 145 26.9
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 4.4e-06 56.6 223 21.5
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 5.8e-06 56.2 222 21.2
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 7.6e-06 55.8 223 21.5
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 7.6e-06 55.8 223 21.5
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 7.6e-06 55.8 115 29.6
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 9.9e-06 55.5 204 21.6


User provided reference genes

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