Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.3e-40 168.3 77 100.0
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.1e-24 114.0 161 44.1
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 3.7e-22 107.8 161 41.6
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 1.2e-20 102.8 161 40.4
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 3.4e-20 101.3 161 39.8
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 3.4e-20 101.3 164 39.6
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 4.5e-20 100.9 164 39.0
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 4.5e-20 100.9 164 39.6
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 5.9e-20 100.5 164 39.0
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 7.6e-20 100.1 154 40.3
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 1.3e-19 99.4 164 38.4
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 2.9e-19 98.2 165 38.2
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 5.0e-19 97.4 161 38.5
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 5.0e-19 97.4 161 37.9
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 6.5e-19 97.1 161 37.3
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 8.5e-19 96.7 161 37.3
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 8.5e-19 96.7 161 37.3
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 8.5e-19 96.7 161 37.3
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 8.5e-19 96.7 161 36.6
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 1.1e-18 96.3 164 37.8
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 1.4e-18 95.9 161 37.3
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.4e-18 95.9 161 37.3
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 1.9e-18 95.5 161 38.5
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 2.5e-18 95.1 161 37.3
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 2.5e-18 95.1 161 38.5
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 3.2e-18 94.7 163 38.0
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 4.2e-18 94.4 161 37.3
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 4.2e-18 94.4 161 37.3
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 5.5e-18 94.0 161 37.3
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 9.3e-18 93.2 161 36.6
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 1.2e-17 92.8 161 36.0
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 1.2e-17 92.8 161 36.6
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.2e-17 92.8 161 36.6
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 7.9e-17 90.1 161 36.6
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.0e-16 89.7 161 35.4
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.0e-16 89.7 161 36.0
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.3e-16 89.4 161 34.2
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.8e-16 89.0 161 35.4
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.8e-16 89.0 162 37.0
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.3e-16 88.6 161 34.2
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 3.0e-16 88.2 161 35.4
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 3.0e-16 88.2 161 33.5
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 3.9e-16 87.8 161 33.5
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.9e-16 87.8 162 36.4
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 5.1e-16 87.4 46 80.4
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 6.7e-16 87.0 46 80.4
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 6.7e-16 87.0 161 33.5
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 8.7e-16 86.7 161 34.8
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.5e-15 85.9 161 34.2
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 1.5e-15 85.9 46 80.4
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.5e-15 85.9 161 34.2
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.5e-15 85.9 161 34.2
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.9e-15 85.5 161 34.2
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.9e-15 85.5 161 35.4
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 2.5e-15 85.1 156 35.9
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 3.3e-15 84.7 161 34.8
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 3.3e-15 84.7 161 34.8
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 4.3e-15 84.3 46 80.4
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 4.3e-15 84.3 46 76.1
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 4.3e-15 84.3 161 34.2
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 4.3e-15 84.3 161 33.5
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 5.7e-15 84.0 161 34.8
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 7.4e-15 83.6 46 78.3
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 7.4e-15 83.6 46 78.3
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 7.4e-15 83.6 162 32.7
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 7.4e-15 83.6 46 78.3
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 9.7e-15 83.2 46 78.3
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 9.7e-15 83.2 46 78.3
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.3e-14 82.8 161 33.5
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 1.6e-14 82.4 46 76.1
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 2.2e-14 82.0 46 78.3
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 2.2e-14 82.0 46 76.1
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 4.8e-14 80.9 44 79.5
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 4.8e-14 80.9 153 33.3
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 4.8e-14 80.9 46 73.9
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 4.8e-14 80.9 46 78.3
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 6.3e-14 80.5 46 78.3
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 6.3e-14 80.5 46 73.9
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 8.2e-14 80.1 46 71.7
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 8.2e-14 80.1 46 71.7
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.1e-13 79.7 149 34.2
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.4e-13 79.3 46 73.9
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 1.4e-13 79.3 46 73.9
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 1.8e-13 79.0 46 71.7
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.8e-13 79.0 47 78.7
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 2.4e-13 78.6 46 71.7
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.4e-13 78.6 46 76.1
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.4e-13 78.6 46 76.1
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.4e-13 78.6 46 76.1
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 2.4e-13 78.6 45 77.8
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 2.4e-13 78.6 48 70.8
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 3.1e-13 78.2 46 67.4
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 3.1e-13 78.2 46 67.4
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 3.1e-13 78.2 46 71.7
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 3.1e-13 78.2 46 71.7
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 3.1e-13 78.2 46 71.7
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 3.1e-13 78.2 46 69.6
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 4.1e-13 77.8 44 75.0
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 4.1e-13 77.8 48 68.8
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 5.3e-13 77.4 46 71.7
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 5.3e-13 77.4 48 66.7
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 6.9e-13 77.0 46 71.7
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 9.1e-13 76.6 46 69.6
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 9.1e-13 76.6 161 32.3
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 9.1e-13 76.6 166 31.3
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 1.2e-12 76.3 46 69.6
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.2e-12 76.3 44 72.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.5e-12 75.9 46 69.6
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 2.0e-12 75.5 46 69.6
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 2.6e-12 75.1 46 69.6
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 2.6e-12 75.1 46 69.6
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 2.6e-12 75.1 46 67.4
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 4.5e-12 74.3 46 67.4
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 4.5e-12 74.3 46 67.4
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 4.5e-12 74.3 161 31.1
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 1.7e-11 72.4 48 70.8
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 2.9e-11 71.6 46 67.4
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.8e-11 71.2 44 72.7
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 8.5e-11 70.1 39 74.4
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.4e-10 69.3 39 74.4
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 2.5e-10 68.6 55 60.0
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 3.2e-10 68.2 46 60.9
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 6.1e-09 63.9 50 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 6.7e-08 60.5 44 56.8
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.1e-07 59.7 38 65.8
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 1.5e-07 59.3 35 65.7
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.5e-07 59.3 36 66.7
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 2.6e-07 58.5 44 54.5
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 2.6e-07 58.5 40 60.0
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 5.7e-07 57.4 44 52.3
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.3e-06 56.2 44 50.0


User provided reference genes

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