Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 4.8e-271 937.2 457 100.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 5.5e-259 897.1 458 94.8
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 3.7e-247 857.8 465 91.4
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 3.9e-228 794.7 458 85.2
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.8e-225 785.8 457 83.2
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 2.6e-224 781.9 456 82.5
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 6.4e-223 777.3 432 86.3
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.4e-222 776.2 464 83.0
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 9.2e-222 773.5 432 86.1
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 9.2e-222 773.5 458 81.9
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 7.8e-221 770.4 457 82.7
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 7.3e-219 763.8 457 82.1
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.5e-216 756.1 484 76.2
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.4e-216 755.0 423 83.9
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.7e-215 752.7 423 83.7
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 7.1e-214 747.3 424 84.7
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.0e-212 743.4 421 82.4
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 2.3e-212 742.3 426 82.4
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 2.3e-212 742.3 481 74.6
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 6.6e-212 740.7 432 81.5
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 6.6e-212 740.7 430 82.1
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.1e-211 740.0 425 82.4
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 3.3e-211 738.4 430 80.9
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 4.3e-211 738.0 427 81.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.6e-211 737.6 482 74.9
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 9.6e-211 736.9 426 81.7
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 6.2e-210 734.2 423 82.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.4e-209 733.0 424 82.1
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.4e-209 733.0 478 76.4
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 5.2e-209 731.1 429 81.4
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 2.6e-208 728.8 430 78.8
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.2e-207 725.7 448 77.7
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 8.4e-207 723.8 436 78.0
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.1e-206 723.4 435 80.5
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.9e-206 722.6 433 79.7
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 3.2e-206 721.8 425 80.7
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.2e-206 721.5 437 79.4
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.4e-206 721.1 433 79.2
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 7.1e-206 720.7 432 80.3
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 2.7e-205 718.8 429 78.8
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 3.5e-205 718.4 454 76.0
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 4.6e-205 718.0 433 79.4
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.0e-205 717.6 424 79.2
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 7.8e-205 717.2 432 78.7
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.3e-204 716.5 474 73.4
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.7e-204 716.1 434 77.6
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.1e-204 714.5 428 77.8
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 6.6e-204 714.1 425 79.8
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.1e-203 713.4 423 78.3
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.5e-203 712.2 424 78.8
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 2.5e-203 712.2 424 78.8
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 3.3e-203 711.8 432 77.1
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.3e-203 711.4 432 77.3
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 5.6e-203 711.1 458 76.2
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 9.6e-203 710.3 428 77.6
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.3e-202 709.9 428 78.0
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.6e-202 709.5 435 76.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.8e-202 708.8 431 76.6
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 3.6e-202 708.4 432 76.9
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 4.8e-202 708.0 425 77.2
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 6.2e-202 707.6 432 76.6
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 8.1e-202 707.2 455 74.3
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 8.1e-202 707.2 440 77.5
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.1e-201 706.8 448 75.2
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.1e-201 706.8 425 76.9
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.1e-201 706.8 425 77.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.8e-201 706.1 431 76.6
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.8e-201 706.1 431 76.6
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 4.0e-201 704.9 433 76.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 6.9e-201 704.1 466 71.7
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 9.0e-201 703.7 432 76.6
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.4e-200 701.8 447 75.2
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 4.5e-200 701.4 457 74.0
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 7.6e-200 700.7 431 75.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 7.6e-200 700.7 431 75.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.9e-199 698.7 447 75.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.4e-198 696.4 423 76.6
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 4.2e-198 694.9 443 74.7
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 9.3e-198 693.7 423 77.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 4.6e-197 691.4 456 73.9
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 7.9e-197 690.6 419 79.0
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 5.1e-196 688.0 428 77.1
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.1e-195 686.8 427 76.1
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 3.6e-194 681.8 412 78.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 4.8e-194 681.4 445 73.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.1e-193 678.7 406 79.1
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 4.5e-192 674.9 420 76.0
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 6.4e-191 671.0 401 78.6
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.9e-188 661.8 482 68.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.5e-187 659.1 426 73.9
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.3e-187 658.7 378 82.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 7.4e-187 657.5 439 72.2
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 8.7e-180 634.0 430 73.0
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 8.2e-178 627.5 424 70.3
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.1e-177 625.5 378 78.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 9.0e-177 624.0 411 73.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 2.1e-173 612.8 423 72.3
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.3e-172 609.4 422 68.7
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 5.1e-172 608.2 394 74.1
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 2.5e-171 605.9 423 70.4
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.3e-171 605.5 429 67.1
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 5.9e-168 594.7 411 69.3
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 9.4e-166 587.4 341 80.9
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.2e-162 576.2 390 70.8
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.7e-162 575.5 378 74.6
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 2.0e-160 569.7 440 60.9
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.6e-160 569.3 409 67.0
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 3.2e-158 562.4 418 65.6
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 4.1e-153 545.4 380 70.8
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 9.4e-150 534.3 442 60.6
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 5.3e-145 518.5 326 77.0
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.0e-144 516.5 464 57.3
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 5.7e-123 445.3 348 67.0
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 9.8e-123 444.5 254 81.5
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 9.5e-118 427.9 297 70.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 9.5e-118 427.9 297 70.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 8.0e-117 424.9 391 54.2
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 8.9e-108 394.8 295 66.1
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 3.9e-103 379.4 290 66.6
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 5.6e-102 375.6 264 69.7
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 2.1e-101 373.6 285 64.6
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 3.6e-101 372.9 314 62.1
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 9.9e-91 338.2 386 46.1
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.9e-84 315.5 208 74.0
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.8e-79 300.8 336 47.3
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.2e-73 279.6 206 67.0
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 7.9e-72 275.4 580 33.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 3.7e-69 266.5 248 56.0
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.3e-50 204.9 459 33.8
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.5e-46 191.4 110 81.8
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 4.4e-38 163.3 112 67.0
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 3.5e-35 153.7 85 82.4
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 8.0e-32 142.5 109 60.6
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 6.3e-29 132.9 77 80.5
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 3.7e-21 107.1 74 71.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 4.1e-20 103.6 60 73.3
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.7e-18 98.2 92 53.3
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 3.8e-18 97.1 69 65.2
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.8e-18 97.1 69 65.2
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 3.8e-18 97.1 69 65.2
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 5.0e-18 96.7 68 66.2
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 6.6e-18 96.3 69 66.7
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 6.6e-18 96.3 69 65.2
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.9e-17 94.7 70 62.9
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.3e-17 94.0 69 63.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 4.2e-17 93.6 68 64.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 5.5e-17 93.2 69 62.3
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 1.6e-16 91.7 53 75.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 2.8e-13 80.9 87 52.9
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.4e-12 78.6 69 59.4
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 3.6e-08 63.9 44 70.5
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 4.7e-08 63.5 45 68.9
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 2.0e-06 58.2 50 56.0


User provided reference genes

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