Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 5.2e-28 127.1 69 100.0
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.6e-24 115.5 69 87.0
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 6.0e-24 113.6 67 86.6
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 5.2e-20 100.5 69 78.3
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 2.9e-18 94.7 64 75.0
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 2.9e-18 94.7 64 75.0
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 6.4e-18 93.6 69 78.3
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 8.4e-18 93.2 68 73.5
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 4.2e-17 90.9 69 69.6
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 7.1e-17 90.1 70 72.9
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 2.1e-16 88.6 68 73.5
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 4.6e-16 87.4 69 69.6
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 66.2
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 66.2
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 66.2
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 66.2
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 4.6e-16 87.4 68 66.2
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 6.0e-16 87.0 69 68.1
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 6.0e-16 87.0 68 69.1
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 1.3e-15 85.9 65 73.8
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 2.3e-15 85.1 62 77.4
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 3.0e-15 84.7 67 76.1
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 5.1e-15 84.0 68 67.6
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 6.6e-15 83.6 66 69.7
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 6.6e-15 83.6 70 67.1
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 1.1e-14 82.8 70 67.1
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 1.1e-14 82.8 70 68.6
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 1.1e-14 82.8 70 70.0
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 1.5e-14 82.4 64 65.6
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 1.5e-14 82.4 65 69.2
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.9e-14 82.0 67 64.2
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 2.5e-14 81.6 70 67.1
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 2.5e-14 81.6 62 69.4
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 2.5e-14 81.6 65 73.8
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 3.3e-14 81.3 65 67.7
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 4.3e-14 80.9 70 68.6
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 7.3e-14 80.1 70 67.1
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 7.3e-14 80.1 70 67.1
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 7.3e-14 80.1 71 66.2
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 9.6e-14 79.7 70 65.7
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 9.6e-14 79.7 68 64.7
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 1.3e-13 79.3 70 61.4
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 1.6e-13 79.0 69 63.8
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 1.6e-13 79.0 67 71.6
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 2.1e-13 78.6 65 64.6
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 2.8e-13 78.2 72 66.7
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 3.6e-13 77.8 72 68.1
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 4.8e-13 77.4 70 70.0
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 4.8e-13 77.4 69 60.9
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 6.2e-13 77.0 70 65.7
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 8.1e-13 76.6 71 66.2
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 8.1e-13 76.6 70 62.9
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 1.1e-12 76.3 65 66.2
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 1.4e-12 75.9 72 68.1
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 2.4e-12 75.1 70 61.4
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 2.4e-12 75.1 65 66.2
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 2.4e-12 75.1 63 69.8
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 3.1e-12 74.7 70 65.7
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 4.0e-12 74.3 65 66.2
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 4.0e-12 74.3 71 60.6
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 5.3e-12 73.9 66 63.6
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 6.9e-12 73.6 66 63.6
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 2.0e-11 72.0 69 60.9
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 2.0e-11 72.0 66 62.1
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 2.0e-11 72.0 66 62.1
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 2.0e-11 72.0 66 62.1
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 2.0e-11 72.0 66 62.1
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 2.0e-11 72.0 66 62.1
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 2.0e-11 72.0 66 62.1
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 4.5e-11 70.9 65 64.6
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 5.8e-11 70.5 60 65.0
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 5.8e-11 70.5 66 68.2
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 9.9e-11 69.7 63 58.7
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 1.3e-10 69.3 70 61.4
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 1.7e-10 68.9 70 61.4
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 3.8e-10 67.8 70 61.4
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 3.8e-10 67.8 69 60.9
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 4.9e-10 67.4 65 56.9
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 6.4e-10 67.0 70 61.4
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 4.2e-09 64.3 41 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 2.1e-08 62.0 67 50.7
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 3.0e-07 58.2 42 64.3
Os04g0657900 Oryza sativa ssp. japonica HOM05D007805 ORTHO05D009877 3.0e-07 58.2 72 54.2
Pp3c13_11150 Physcomitrium patens HOM05D007805 ORTHO05D009877 1.1e-06 56.2 71 49.3
Mapoly0001s0153 Marchantia polymorpha HOM05D007805 ORTHO05D009877 2.5e-06 55.1 68 44.1
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 4.3e-06 54.3 65 50.8


User provided reference genes

Program Settings