Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.7e-202 708.8 447 100.0
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.0e-177 625.5 447 83.2
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 9.5e-147 524.2 446 73.3
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.1e-145 520.8 474 72.8
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.5e-144 516.9 263 92.4
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 7.5e-144 514.6 415 77.1
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.9e-139 500.0 264 86.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.6e-138 496.9 268 85.1
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.1e-138 496.5 266 85.3
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.8e-138 496.1 288 79.9
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.8e-138 496.1 268 85.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 8.9e-137 491.1 451 69.8
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.5e-136 490.3 268 84.0
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.5e-136 490.3 268 84.0
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 2.0e-136 490.0 263 86.3
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 5.8e-136 488.4 266 84.6
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.2e-135 486.5 275 78.9
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 2.2e-135 486.5 291 78.4
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 3.8e-135 485.7 264 84.8
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.9e-135 485.3 266 83.8
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.4e-134 483.8 274 81.0
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.4e-134 483.8 265 84.5
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 5.4e-134 481.9 265 83.8
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 2.1e-133 479.9 264 84.1
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 6.0e-133 478.4 268 82.8
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.3e-132 477.2 261 83.1
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.3e-132 476.5 257 83.7
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.3e-132 476.5 289 75.1
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 3.9e-132 475.7 264 81.1
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 5.1e-132 475.3 260 82.7
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.1e-132 475.3 291 77.7
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 6.6e-132 474.9 260 82.7
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 6.6e-132 474.9 267 80.9
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 8.7e-132 474.6 266 82.0
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.1e-131 474.2 275 78.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 1.5e-131 473.8 455 62.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.5e-131 473.8 291 77.0
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.5e-131 473.0 265 83.4
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 3.3e-131 472.6 259 83.4
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 3.3e-131 472.6 260 81.9
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.3e-131 472.6 268 81.7
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.3e-131 472.6 269 80.3
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 7.3e-131 471.5 255 81.6
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.6e-131 471.1 291 75.6
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.2e-130 470.7 336 73.8
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.1e-130 469.9 266 81.2
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 2.8e-130 469.5 264 81.8
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 3.6e-130 469.2 259 82.6
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 3.6e-130 469.2 255 81.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.4e-129 467.2 266 80.5
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.8e-129 466.8 261 81.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.8e-129 466.8 260 80.4
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.8e-129 466.8 269 78.1
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.4e-129 466.5 267 78.3
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.3e-129 465.3 271 79.0
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 6.9e-129 464.9 269 77.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 6.9e-129 464.9 269 78.8
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.2e-128 464.2 253 81.8
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 7.6e-128 461.5 338 68.9
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 7.6e-128 461.5 273 79.1
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 6.4e-127 458.4 253 82.6
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.1e-126 457.6 264 78.8
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.1e-126 457.6 288 74.0
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.4e-126 457.2 291 73.5
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.4e-126 456.4 324 68.2
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 5.4e-126 455.3 316 69.6
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 9.3e-126 454.5 291 74.6
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 9.3e-126 454.5 258 82.2
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 3.5e-125 452.6 271 76.8
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 6.0e-125 451.8 261 80.5
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.3e-124 450.7 312 69.6
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 5.1e-124 448.7 258 79.5
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 6.6e-124 448.4 291 72.5
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 1.5e-123 447.2 238 84.9
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.9e-123 446.8 291 74.2
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.9e-123 446.8 260 78.5
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.9e-123 446.8 256 79.7
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 2.5e-123 446.4 291 72.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 3.3e-123 446.0 324 66.4
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 4.3e-123 445.7 291 74.2
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.3e-123 445.7 331 68.0
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 9.6e-123 444.5 265 78.1
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.3e-122 444.1 259 76.4
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.3e-122 444.1 262 76.3
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.6e-122 443.7 291 71.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.1e-122 443.4 291 73.9
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.2e-122 441.8 268 76.1
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 8.1e-122 441.4 262 77.9
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 8.1e-122 441.4 238 85.7
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.1e-121 441.0 263 77.6
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.1e-121 441.0 253 79.8
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.4e-121 440.7 293 73.7
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.2e-120 437.6 253 77.1
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 4.5e-120 435.6 264 73.9
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 9.9e-120 434.5 268 75.4
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.7e-119 433.7 266 75.2
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.2e-119 433.3 259 76.8
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.2e-119 433.3 267 76.8
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.9e-119 433.0 318 67.3
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 7.1e-118 428.3 267 74.9
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 3.5e-117 426.0 261 77.4
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.0e-116 424.5 266 72.9
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.8e-116 423.7 288 69.4
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.9e-115 420.2 260 76.9
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.9e-115 420.2 329 64.1
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.3e-113 412.1 257 75.1
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 2.0e-112 410.2 312 62.5
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.4e-112 409.5 335 63.0
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.2e-109 401.0 269 70.6
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 4.8e-106 389.0 288 67.4
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.1e-105 387.9 259 69.5
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.4e-105 387.5 234 77.8
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.9e-103 379.8 257 71.6
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.3e-100 370.9 204 79.4
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.3e-100 370.9 281 63.7
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 7.4e-99 365.2 212 77.8
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.3e-91 339.7 274 58.0
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 4.3e-91 339.3 183 83.1
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 8.2e-90 335.1 274 56.6
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 4.1e-89 332.8 262 57.3
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 2.0e-88 330.5 368 62.5
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.1e-85 320.5 367 65.4
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.1e-85 320.5 367 65.4
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 8.8e-84 315.1 177 83.1
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.5e-83 314.3 197 76.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 7.4e-83 312.0 249 61.4
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.4e-81 307.0 262 58.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 2.6e-80 303.5 245 59.2
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-79 300.8 182 76.9
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.8e-79 299.7 177 79.1
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.2e-78 296.2 173 80.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.0e-72 277.3 242 57.9
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.0e-72 277.3 222 61.3
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.1e-69 267.3 172 73.3
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.7e-66 257.7 263 50.6
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 8.5e-63 245.4 252 48.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.5e-62 244.6 203 54.7
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 5.7e-59 232.6 199 58.8
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.2e-58 230.7 273 46.5
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.1e-53 214.2 179 55.9
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 8.0e-53 212.2 133 77.4
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.0e-52 211.8 185 58.4
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.0e-52 211.8 230 50.4
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.7e-50 203.4 122 79.5
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.4e-49 201.4 118 80.5
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.4e-49 201.4 223 45.7
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.8e-45 187.2 249 41.8
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 3.4e-43 180.3 170 52.4
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.9e-38 164.5 128 59.4
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 3.3e-38 163.7 124 58.9
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.2e-37 161.8 88 80.7
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.8e-29 134.0 81 70.4
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 7.8e-16 89.4 49 73.5
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 7.8e-16 89.4 49 73.5
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 5.6e-14 83.2 54 66.7
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.7e-07 61.6 165 27.3
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.1e-06 58.9 141 29.1
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 9.6e-06 55.8 86 39.5


User provided reference genes

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