Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 6.1e-98 360.9 195 100.0
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.5e-96 356.3 195 98.5
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.1e-94 350.1 195 96.4
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 5.0e-92 341.3 195 93.3
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 4.2e-91 338.2 195 93.3
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 3.6e-90 335.1 194 91.8
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 4.0e-89 331.6 195 91.8
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.3e-88 328.6 195 91.3
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.0e-85 319.3 195 88.7
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 4.5e-85 318.2 195 85.1
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 5.9e-85 317.8 195 86.2
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 7.7e-85 317.4 195 85.6
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.2e-84 315.8 195 88.2
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 4.2e-83 311.6 194 85.1
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 4.2e-83 311.6 194 85.1
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 5.5e-83 311.2 195 84.6
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 5.5e-83 311.2 195 83.1
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.1e-82 309.3 195 82.6
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.1e-82 309.3 195 86.7
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 6.1e-82 307.8 195 83.1
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.3e-81 305.8 195 85.6
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 6.8e-81 304.3 194 85.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.0e-80 302.8 195 82.1
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.6e-80 302.4 195 82.6
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.3e-79 300.1 195 81.0
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.3e-79 300.1 195 81.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.7e-79 299.7 195 80.5
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.2e-79 299.3 195 81.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.2e-79 299.3 195 82.1
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 3.7e-79 298.5 195 80.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 6.3e-79 297.7 195 80.0
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.1e-78 297.0 195 79.5
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.8e-78 296.2 195 79.0
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 7.0e-78 294.3 194 80.4
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 9.1e-78 293.9 195 79.5
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.2e-77 293.5 195 79.5
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.6e-77 293.1 195 79.5
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.7e-77 292.4 195 77.4
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 7.7e-77 290.8 195 81.5
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 3.8e-76 288.5 195 79.0
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 3.8e-76 288.5 195 79.0
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.8e-76 288.5 194 77.8
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 3.8e-76 288.5 194 78.9
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.0e-76 288.1 194 78.9
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 8.6e-76 287.3 193 77.7
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.1e-75 287.0 194 78.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.5e-75 286.6 194 77.8
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.2e-75 285.4 195 77.9
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 3.2e-75 285.4 195 80.5
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.2e-75 285.0 195 77.4
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 7.2e-75 284.3 195 80.5
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.2e-74 283.5 194 77.8
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.2e-74 283.5 194 77.8
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.6e-74 283.1 194 77.3
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.8e-74 282.3 195 76.9
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.6e-74 282.0 194 75.3
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.6e-74 282.0 194 78.9
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 4.7e-74 281.6 195 75.4
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 6.1e-74 281.2 195 73.8
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 6.1e-74 281.2 195 73.8
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.1e-74 281.2 195 73.8
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.1e-74 281.2 195 73.8
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 8.0e-74 280.8 195 73.8
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 8.0e-74 280.8 195 73.3
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 8.0e-74 280.8 195 73.3
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.0e-73 280.4 194 76.3
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.0e-73 280.4 194 76.3
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.8e-73 279.6 195 75.9
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.3e-73 279.3 196 75.5
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 5.2e-73 278.1 195 75.4
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 6.8e-73 277.7 193 74.6
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 6.8e-73 277.7 195 77.9
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 1.5e-72 276.6 195 75.9
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.5e-72 276.6 195 75.9
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 2.0e-72 276.2 195 78.5
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 4.4e-72 275.0 195 76.4
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 5.7e-72 274.6 195 74.9
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 7.5e-72 274.2 195 77.9
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 9.8e-72 273.9 194 76.3
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.8e-72 273.9 195 77.9
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.7e-71 273.1 195 77.4
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.2e-71 272.7 195 76.4
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 3.7e-71 271.9 190 76.3
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 6.3e-71 271.2 195 73.8
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 4.1e-70 268.5 195 73.8
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.4e-70 268.1 195 76.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 7.0e-70 267.7 195 74.4
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.7e-69 265.8 194 71.6
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.5e-69 265.4 195 73.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.9e-69 264.6 139 100.0
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 2.3e-68 262.7 196 70.4
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.3e-67 258.5 195 74.4
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.3e-67 258.5 195 73.3
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 7.3e-67 257.7 194 72.2
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.7e-66 255.0 188 68.6
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 8.0e-66 254.2 192 67.2
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.4e-65 253.4 194 69.1
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.7e-63 246.5 159 79.9
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.1e-62 243.8 195 66.2
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.1e-62 243.8 194 68.6
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.4e-62 243.4 195 66.7
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.2e-61 240.4 189 69.8
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 7.8e-61 237.7 203 61.6
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 6.6e-60 234.6 187 69.5
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 8.6e-60 234.2 195 67.7
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.1e-59 233.8 195 64.6
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 2.5e-59 232.6 195 64.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.6e-58 228.8 195 64.6
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 4.9e-55 218.4 176 68.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 5.6e-51 204.9 124 85.5
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 2.1e-50 203.0 206 53.4
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 4.6e-45 185.3 186 60.2
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.7e-44 183.3 120 85.8
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 3.0e-44 182.6 115 87.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 4.0e-41 172.2 189 51.9
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.5e-37 159.1 143 60.8
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 7.3e-35 151.4 217 44.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.4e-33 147.1 169 50.9
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.8e-33 146.7 183 48.6
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 3.1e-33 146.0 182 45.1
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.7e-29 132.9 97 78.4
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.6e-29 132.1 97 77.3
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 5.6e-27 125.2 110 64.5
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.0e-24 116.7 86 69.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.6e-21 105.5 68 83.8
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 5.1e-20 102.1 108 59.3
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 9.6e-19 97.8 60 80.0
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 8.1e-18 94.7 90 64.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.8e-17 93.6 150 43.3
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.4e-17 93.2 95 54.7
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 7.6e-16 88.2 172 36.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 2.5e-11 73.2 166 30.7
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 4.0e-09 65.9 57 64.9
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.7e-07 60.5 82 51.2
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 2.5e-06 56.6 191 28.3


User provided reference genes

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