Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 5.5e-173 610.9 317 100.0
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 1.0e-155 553.5 300 95.7
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 2.7e-148 528.9 310 91.6
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 3.6e-148 528.5 302 90.7
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 1.1e-141 506.9 303 87.5
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 2.6e-138 495.7 303 84.8
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 2.6e-138 495.7 303 84.8
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 9.8e-138 493.8 305 83.6
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 4.9e-137 491.5 307 83.4
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 2.7e-135 485.7 305 82.0
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 7.3e-133 477.6 305 81.3
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 1.7e-126 456.4 306 77.8
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 6.6e-126 454.5 304 77.3
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 4.0e-123 445.3 301 75.7
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 6.8e-123 444.5 307 75.9
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 8.9e-123 444.1 301 77.7
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 1.2e-122 443.7 306 75.8
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 2.6e-122 442.6 308 76.9
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 3.4e-122 442.2 310 75.5
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 5.8e-122 441.4 301 76.1
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.7e-121 439.9 301 75.7
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 4.9e-121 438.3 304 75.0
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 6.4e-121 438.0 301 76.4
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.4e-121 438.0 304 75.3
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.4e-121 438.0 304 75.0
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 1.1e-120 437.2 304 75.0
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.1e-120 437.2 304 75.0
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 2.4e-120 436.0 310 75.5
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 3.2e-120 435.6 301 75.7
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 4.1e-120 435.3 306 73.9
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 5.4e-120 434.9 304 74.7
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 9.2e-120 434.1 316 73.7
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 9.2e-120 434.1 301 75.1
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 2.7e-119 432.6 309 75.4
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 3.5e-119 432.2 309 75.4
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 3.5e-119 432.2 316 72.2
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 2.3e-118 429.5 301 73.8
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 3.9e-118 428.7 316 71.5
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 3.9e-118 428.7 301 74.4
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 5.0e-118 428.3 331 69.5
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 6.6e-118 427.9 301 73.8
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 8.6e-118 427.6 316 70.9
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 1.1e-117 427.2 303 73.9
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 1.5e-117 426.8 301 73.4
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.9e-117 426.4 302 73.2
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 2.5e-117 426.0 304 73.0
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 7.3e-117 424.5 308 70.5
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 9.5e-117 424.1 319 70.8
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 1.2e-116 423.7 301 72.8
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 1.6e-116 423.3 306 74.5
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 2.1e-116 422.9 312 72.8
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 4.7e-116 421.8 306 73.9
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 4.7e-116 421.8 312 71.5
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 6.2e-116 421.4 336 69.6
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 6.2e-116 421.4 336 69.6
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.4e-115 420.2 301 72.8
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.8e-115 419.9 301 71.8
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 1.8e-115 419.9 304 72.4
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 3.1e-115 419.1 301 72.1
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.5e-114 416.8 309 70.2
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 1.7e-113 413.3 301 71.1
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 3.7e-113 412.1 310 68.4
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 4.9e-113 411.8 301 71.4
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.4e-112 410.2 314 67.8
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 4.1e-112 408.7 310 68.1
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 5.4e-112 408.3 276 76.1
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 5.4e-112 408.3 310 67.4
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 7.1e-112 407.9 310 67.7
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 9.2e-112 407.5 310 67.7
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 1.2e-111 407.1 310 67.7
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 1.6e-111 406.8 276 75.7
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 2.1e-111 406.4 310 68.4
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 3.5e-111 405.6 310 68.1
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 3.5e-111 405.6 273 75.8
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 6.0e-111 404.8 314 66.9
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 6.0e-111 404.8 323 68.1
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 1.3e-110 403.7 276 74.3
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.3e-110 403.7 310 68.1
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.3e-110 403.7 276 75.4
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 5.1e-110 401.7 311 66.9
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 7.3e-109 397.9 347 62.2
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 9.5e-109 397.5 292 69.5
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 4.7e-108 395.2 309 67.3
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 6.2e-108 394.8 301 68.8
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 6.8e-107 391.3 339 62.5
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 1.5e-106 390.2 323 67.2
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 1.5e-106 390.2 300 66.3
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 6.4e-105 384.8 325 64.9
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 2.8e-100 369.4 301 67.1
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 5.2e-99 365.2 275 68.7
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 2.0e-98 363.2 310 63.5
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 3.9e-94 349.0 319 61.4
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 7.3e-93 344.7 324 59.9
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 4.0e-91 339.0 341 57.2
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 6.4e-89 331.6 276 64.1
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 2.7e-87 326.2 315 56.8
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 3.9e-86 322.4 300 58.7
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.1e-83 314.3 226 71.7
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 9.3e-80 301.2 241 67.6
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 2.1e-79 300.1 206 75.2
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 3.5e-79 299.3 237 68.4
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.5e-77 293.1 322 52.5
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 2.0e-74 283.5 257 61.5
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 4.1e-67 259.2 301 49.5
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 1.5e-66 257.3 212 66.5
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.6e-60 237.3 267 47.9
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 3.8e-57 226.1 269 45.7
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 5.9e-50 202.2 196 61.2
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 3.2e-48 196.4 316 37.3
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 5.2e-46 189.1 275 38.9
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 3.1e-43 179.9 159 63.5
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 2.1e-39 167.2 248 37.9
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 2.0e-37 160.6 229 40.6
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.7e-34 150.2 120 65.8
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.1e-32 144.8 182 50.0
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.4e-30 137.9 239 36.4
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 5.4e-27 125.9 88 75.0
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 2.6e-21 107.1 74 70.3
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 5.9e-18 95.9 97 54.6
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 9.5e-16 88.6 78 55.1
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 1.5e-13 81.3 138 41.3
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 1.1e-08 65.1 63 44.4
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 1.5e-08 64.7 79 50.6


User provided reference genes

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