Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.5e-256 889.0 469 100.0
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 6.3e-250 867.1 469 96.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.2e-248 862.8 469 96.4
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 3.1e-241 838.2 469 93.6
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 7.0e-241 837.0 468 93.6
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 4.2e-238 827.8 468 92.7
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.0e-232 808.9 468 89.7
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 5.9e-232 807.4 469 90.4
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.9e-231 805.1 469 89.8
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.0e-231 804.3 469 89.3
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 5.0e-231 804.3 469 88.9
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 6.5e-231 803.9 470 89.1
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.2e-230 801.6 469 89.3
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 5.5e-230 800.8 469 89.3
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 9.4e-230 800.0 469 89.3
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.2e-229 799.7 469 89.8
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 4.7e-229 797.7 468 88.7
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 8.0e-229 797.0 469 88.3
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.0e-228 796.6 469 87.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 3.0e-228 795.0 469 88.7
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.0e-228 794.7 469 88.7
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 5.2e-228 794.3 469 88.3
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 8.8e-228 793.5 469 89.3
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 8.8e-228 793.5 469 88.5
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.2e-227 793.1 469 87.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.5e-227 792.7 469 88.9
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.4e-227 791.6 471 88.5
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 5.7e-227 790.8 469 88.5
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 5.7e-227 790.8 469 88.9
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 9.8e-227 790.0 469 88.1
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.7e-226 789.3 469 87.4
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.7e-226 789.3 469 88.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.8e-226 787.7 469 88.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 6.3e-226 787.3 469 88.5
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 6.3e-226 787.3 470 87.2
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 3.1e-225 785.0 469 87.6
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 7.0e-225 783.9 469 87.0
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 9.1e-225 783.5 506 83.0
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.6e-224 782.7 469 88.7
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 3.5e-224 781.6 493 84.4
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 4.5e-224 781.2 506 82.8
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.9e-224 780.8 469 86.6
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.9e-224 780.8 469 86.6
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.3e-223 779.6 469 86.4
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 5.0e-223 777.7 469 86.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 6.6e-223 777.3 469 87.0
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 6.6e-223 777.3 469 85.9
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.5e-222 776.2 468 88.5
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 5.5e-222 774.2 470 86.0
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 1.2e-221 773.1 470 85.7
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.8e-220 769.2 470 85.7
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.3e-220 768.8 470 85.5
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.5e-219 766.1 469 84.4
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.6e-219 765.4 470 85.5
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 7.5e-219 763.8 469 84.6
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 9.8e-219 763.5 464 86.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.2e-218 762.3 469 84.0
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.4e-217 759.6 469 83.6
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.4e-217 759.6 545 77.1
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 84.4
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 5.4e-217 757.7 464 87.1
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 83.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 83.8
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-216 756.1 469 83.4
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 2.0e-216 755.7 469 83.4
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 3.5e-216 755.0 469 83.2
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.0e-215 753.4 469 83.2
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.7e-215 752.7 469 82.9
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.7e-215 752.7 469 82.9
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.0e-215 751.1 469 82.5
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 6.6e-215 750.7 469 82.9
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.1e-214 750.0 469 82.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 3.3e-214 748.4 469 82.7
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.2e-213 746.5 470 82.8
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.2e-213 746.5 470 82.8
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.0e-212 743.4 469 84.2
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.4e-212 743.0 469 82.5
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 6.8e-212 740.7 471 82.4
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.4e-211 738.4 497 78.5
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 3.4e-211 738.4 469 81.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 5.8e-211 737.6 493 78.9
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.4e-209 733.0 469 82.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.9e-209 732.6 470 83.6
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 3.6e-205 718.4 491 79.0
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 8.0e-205 717.2 470 81.9
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 3.1e-204 715.3 441 84.8
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.0e-203 712.6 492 77.8
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.2e-202 709.1 418 89.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.2e-202 709.1 418 89.2
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 3.0e-199 698.7 418 87.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.9e-193 679.5 470 80.0
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 9.2e-193 677.2 397 89.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 4.6e-192 674.9 418 86.4
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.9e-191 671.8 461 77.7
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 5.1e-191 671.4 374 94.9
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.4e-187 658.7 469 77.6
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 7.6e-187 657.5 423 82.5
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.3e-183 646.7 383 88.5
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.5e-182 643.3 469 70.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.7e-170 603.2 365 89.3
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 3.0e-167 592.4 340 92.6
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.1e-166 590.5 373 82.3
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 2.4e-164 582.8 350 86.6
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 6.9e-164 581.3 465 64.9
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 4.6e-160 568.5 469 67.8
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.5e-158 563.5 470 60.6
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 9.0e-156 554.3 324 91.4
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 4.5e-139 498.8 312 80.4
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.0e-135 487.6 308 85.7
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 4.7e-128 462.2 365 70.1
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 5.2e-127 458.8 324 77.2
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 9.8e-110 401.4 246 86.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.6e-88 330.9 312 63.5
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 1.1e-84 318.2 238 73.9
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.3e-82 310.5 182 84.6
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 7.3e-81 305.4 173 87.9
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.8e-79 300.8 301 55.8
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.4e-76 290.4 493 37.9
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 9.9e-70 268.5 210 59.5
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.1e-68 265.0 294 53.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 9.3e-68 261.9 160 86.9
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 2.7e-59 233.8 195 70.8
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 6.0e-59 232.6 139 89.2
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.7e-58 228.8 407 41.3
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 4.5e-54 216.5 119 95.8
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.3e-48 198.4 328 39.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.0e-45 188.7 111 89.2
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 3.8e-45 186.8 500 29.6
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 4.2e-44 183.3 115 86.1
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.7e-43 180.6 107 80.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 8.2e-40 169.1 105 78.1
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-38 164.9 91 92.3
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-30 138.3 83 84.3
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 4.2e-28 130.2 81 82.7
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.1e-27 127.9 72 86.1
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.8e-26 124.8 74 83.8
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.0e-26 124.0 74 83.8
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 3.0e-26 124.0 72 83.3
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.3e-25 120.6 72 80.6
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-24 118.2 79 75.9
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 4.1e-23 113.6 99 64.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.2e-19 102.1 57 84.2
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 3.0e-18 97.4 57 78.9
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.8e-15 88.2 52 88.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.6e-14 85.1 57 82.5
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.6e-14 84.3 52 90.4
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-13 80.5 44 93.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.9e-12 78.2 74 60.8


User provided reference genes

Program Settings