Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.9e-224 781.2 400 100.0
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.5e-183 645.6 404 84.2
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.0e-171 607.1 379 81.3
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.0e-163 580.5 381 80.1
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.2e-163 579.3 401 75.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.2e-163 579.3 399 74.7
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.9e-163 578.9 378 79.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.8e-163 578.6 401 75.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.7e-161 572.4 393 75.1
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.5e-159 566.6 306 93.8
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 3.8e-147 525.4 388 68.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 9.4e-146 520.8 378 70.6
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.8e-144 514.6 342 74.0
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 6.8e-144 514.6 345 72.2
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 8.8e-144 514.2 339 74.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.5e-143 513.5 342 73.1
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.0e-143 513.1 361 72.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 4.4e-143 511.9 378 68.8
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.7e-143 511.5 342 73.7
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 9.8e-143 510.8 408 65.7
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.3e-142 510.4 341 74.2
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.2e-142 509.6 342 72.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 8.3e-142 507.7 348 72.7
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.1e-141 507.3 328 74.4
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.4e-141 506.9 340 73.5
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.4e-141 506.9 362 70.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.4e-141 506.9 342 71.9
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.4e-141 506.9 319 76.8
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 7.0e-141 504.6 342 73.4
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.5e-140 502.3 343 71.4
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.0e-139 500.7 330 73.6
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.7e-139 500.0 323 73.1
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.2e-139 499.6 408 64.7
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.2e-139 499.6 364 70.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 5.0e-139 498.4 330 73.0
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 5.0e-139 498.4 416 63.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 6.5e-139 498.0 364 69.8
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.1e-138 497.3 315 77.1
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.2e-138 495.7 347 70.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.2e-138 495.7 317 76.0
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.6e-137 493.4 344 70.6
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.6e-137 493.4 324 74.1
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.6e-137 493.4 367 68.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.6e-137 492.3 324 73.5
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 6.1e-137 491.5 330 72.1
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 6.1e-137 491.5 429 61.5
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.4e-136 490.3 359 68.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.0e-136 488.8 327 72.2
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 4.0e-136 488.8 347 70.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 6.8e-136 488.0 318 74.5
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 6.8e-136 488.0 318 74.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 6.8e-136 488.0 318 74.5
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 8.8e-136 487.6 403 64.8
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-135 487.3 318 74.2
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-135 487.3 330 71.8
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.2e-135 487.3 330 71.8
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.0e-135 486.5 330 71.8
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.6e-135 486.1 408 62.3
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 2.6e-135 486.1 355 69.6
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.4e-135 485.7 395 61.8
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 5.7e-135 485.0 318 73.9
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 5.7e-135 485.0 412 62.9
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 9.8e-135 484.2 327 70.6
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.7e-134 483.4 379 65.2
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.2e-134 483.0 359 68.0
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.1e-133 480.7 395 62.0
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.4e-133 480.3 395 62.0
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 2.4e-133 479.6 387 61.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.4e-133 479.6 342 69.0
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 5.4e-133 478.4 342 67.8
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.4e-133 478.4 370 64.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.4e-133 478.4 373 64.1
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 7.0e-133 478.0 314 71.7
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 9.2e-133 477.6 364 64.6
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.2e-132 477.2 390 61.8
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.0e-132 476.5 342 67.3
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.0e-131 474.2 402 59.7
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 6.6e-131 471.5 269 87.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.1e-130 470.7 342 66.7
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 9.5e-130 467.6 320 69.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.0e-128 464.2 319 68.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 2.3e-128 463.0 312 74.4
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.0e-128 462.6 342 65.8
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 5.2e-128 461.8 320 70.0
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 8.9e-128 461.1 316 69.6
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.5e-127 460.3 361 62.9
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 9.8e-127 457.6 327 67.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.8e-127 457.6 320 66.9
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.9e-126 456.1 409 60.9
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-125 453.8 321 70.4
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 5.4e-125 451.8 385 60.0
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 7.0e-125 451.4 317 70.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.2e-125 451.1 333 65.5
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 5.9e-124 448.4 344 62.8
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.3e-122 441.4 321 65.4
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 6.8e-120 434.9 329 66.0
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.2e-119 434.1 421 54.2
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.2e-117 426.0 270 75.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.2e-116 424.1 350 62.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 4.6e-116 422.2 363 59.8
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 6.6e-115 418.3 335 62.1
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 4.3e-114 415.6 289 72.7
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 9.5e-114 414.5 410 52.4
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.2e-113 414.1 400 55.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.6e-111 406.4 254 78.3
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.3e-110 404.1 339 65.2
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 4.9e-110 402.1 352 56.2
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.4e-110 401.7 520 45.4
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 3.0e-107 392.9 264 72.3
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 8.6e-107 391.3 299 65.9
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.6e-105 387.1 260 73.5
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.7e-97 359.0 347 52.4
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.2e-94 350.1 344 54.4
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.6e-92 342.4 321 53.6
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.3e-91 340.9 320 51.9
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.1e-90 337.8 348 51.1
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 5.6e-90 335.5 294 56.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.8e-89 333.2 268 64.9
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 4.2e-85 319.3 218 69.7
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.1e-85 318.5 220 66.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-79 300.8 273 59.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 8.7e-75 285.0 282 52.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.8e-73 279.3 197 71.1
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-72 278.1 173 75.1
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.1e-72 278.1 213 66.2
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.5e-66 257.7 186 68.8
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 8.2e-65 251.9 177 71.8
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.5e-62 242.3 245 51.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.1e-56 223.0 224 56.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 7.7e-47 192.2 117 71.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.1e-45 188.3 135 70.4
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 3.0e-43 180.3 90 94.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.2e-39 168.3 339 33.6
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-38 164.5 150 53.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 4.7e-36 156.4 282 33.3
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.0e-30 138.7 352 31.2
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 8.5e-30 135.6 84 76.2
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.0e-22 112.1 97 50.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.2e-18 98.6 81 67.9
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 5.7e-18 96.3 108 46.3
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 5.0e-14 83.2 184 31.5
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.5e-13 80.9 71 54.9


User provided reference genes

Program Settings