Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1586.2 835 100.0
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1520.8 835 95.8
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1493.0 835 93.2
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1483.4 835 93.1
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1440.6 835 90.4
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1437.9 835 89.9
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1436.0 836 90.1
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1413.3 836 88.9
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1404.4 836 88.6
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1376.7 835 86.7
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1355.1 835 85.5
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1343.2 839 83.7
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1339.3 836 83.5
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1339.3 838 83.7
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1327.8 838 82.7
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1317.4 840 82.5
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1315.1 836 82.1
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1313.5 838 82.5
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1313.5 837 82.1
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1312.0 838 81.4
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1308.9 841 81.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1308.9 836 82.7
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1307.4 836 81.7
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1306.6 840 81.8
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1305.0 837 83.4
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1301.6 836 81.9
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1300.8 836 82.1
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1300.0 835 81.0
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1295.4 838 80.9
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1291.2 839 80.2
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1290.4 837 81.5
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1288.9 840 80.6
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1286.9 838 79.5
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1286.2 842 81.0
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1283.9 841 80.0
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1283.5 840 80.6
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1281.5 839 80.2
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1280.8 839 79.1
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1280.4 839 79.7
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1278.5 839 80.0
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1278.1 842 80.5
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1270.8 839 79.3
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1270.0 840 78.9
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1267.3 859 78.7
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1264.6 833 80.1
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1263.4 841 78.4
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1255.4 837 77.8
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1247.3 837 77.7
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1247.3 837 77.5
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1246.9 928 72.3
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1245.3 837 77.8
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1239.9 837 77.2
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1236.1 845 76.7
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1235.7 837 76.7
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1233.4 835 76.0
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1233.4 838 76.8
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1232.6 838 77.4
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 839 76.8
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1229.2 837 76.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1227.6 837 76.5
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1225.7 835 76.4
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1224.5 839 76.5
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 837 76.2
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 835 77.7
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1219.1 840 75.5
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1216.4 838 76.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1216.4 841 76.5
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1216.4 841 76.6
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1214.9 840 75.8
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1214.1 841 76.5
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1213.4 838 76.1
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1211.8 839 75.9
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1207.2 840 75.8
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1206.8 856 74.2
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 840 75.7
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1204.9 840 75.0
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1203.3 856 73.9
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1203.0 841 75.3
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1192.6 838 75.2
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 839 74.0
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1189.1 854 74.2
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1187.2 837 74.3
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1182.2 837 74.4
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1181.0 854 74.1
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1176.8 838 72.2
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1176.4 838 73.5
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1173.7 834 77.5
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1173.7 804 76.5
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 0.0e+00 1171.0 680 88.8
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 837 72.4
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1159.8 839 72.7
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1130.9 855 70.4
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1130.9 868 72.0
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1120.1 1000 62.4
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1119.4 724 81.2
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1118.6 837 71.0
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1117.8 746 77.5
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 5.7e-312 1074.7 838 67.1
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.1e-286 989.9 720 70.0
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 2.9e-258 895.6 851 56.3
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.0e-250 870.5 864 55.7
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 5.8e-238 828.2 833 54.4
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 4.3e-233 812.0 519 79.8
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 6.6e-226 788.1 604 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 3.3e-225 785.8 751 57.4
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.3e-223 779.6 543 75.3
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.4e-220 770.4 544 73.7
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.3e-212 741.1 511 76.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 9.6e-209 731.1 611 64.8
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 3.1e-199 699.5 902 46.2
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.8e-191 673.7 427 83.8
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 5.1e-186 655.6 562 63.2
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 4.6e-179 632.5 445 77.8
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 5.1e-170 602.4 440 73.2
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.1e-155 553.9 343 82.5
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 3.1e-151 540.0 398 71.1
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.3e-141 507.3 377 71.4
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 8.0e-123 445.7 370 65.9
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 5.8e-121 439.5 341 68.3
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.5e-116 424.9 293 76.5
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 6.6e-109 399.4 424 55.7
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 4.9e-104 383.3 232 82.8
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 4.9e-104 383.3 232 82.3
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.6e-102 378.3 257 78.6
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 5.6e-100 369.8 861 31.5
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.3e-77 294.7 210 71.4
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.9e-71 275.0 858 27.3
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.1e-66 259.2 269 55.4
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.5e-65 253.8 230 62.6
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.1e-62 245.0 212 62.7
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.3e-60 237.7 288 49.0
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 1.1e-58 232.6 178 70.2
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 1.3e-51 209.1 210 62.4
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 1.3e-51 209.1 127 87.4
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 5.0e-48 197.2 130 73.8
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 3.6e-46 191.0 121 76.9
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 4.8e-43 180.6 104 90.4
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 1.7e-40 172.2 102 83.3
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 8.5e-40 169.9 102 83.3
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 1.9e-39 168.7 139 64.0
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 1.5e-36 159.1 95 76.8
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 2.0e-36 158.7 95 78.9
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 2.7e-33 148.3 95 80.0
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 2.2e-32 145.2 97 76.3
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 3.4e-28 131.3 231 39.8
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.4e-28 131.0 95 70.5
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.4e-26 125.2 95 69.5
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.4e-26 125.2 87 81.6
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 5.0e-24 117.5 175 41.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 3.6e-22 111.3 142 47.9
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 3.0e-21 108.2 136 47.8
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 4.0e-21 107.8 82 68.3
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.7e-19 102.4 92 64.1
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.9e-19 100.9 72 77.8
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.3e-19 100.1 99 47.5
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.1e-18 99.8 228 34.2
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.3e-16 92.8 133 49.6
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 3.7e-11 74.7 157 35.0
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-10 72.8 97 46.4
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 3.0e-08 65.1 67 53.7


User provided reference genes

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