Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.7e-27 125.2 60 100.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.1e-26 122.5 60 96.7
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 1.5e-23 112.1 62 88.7
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 3.0e-19 97.8 60 76.7
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.1e-18 95.9 60 73.3
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.5e-18 95.5 59 72.9
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 3.3e-18 94.4 60 73.3
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 3.6e-17 90.9 60 68.3
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 8.1e-17 89.7 55 74.5
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.1e-16 89.4 55 72.7
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 1.4e-16 89.0 60 66.7
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 1.8e-16 88.6 58 65.5
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 2.3e-16 88.2 60 65.0
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 2.3e-16 88.2 54 74.1
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 2.3e-16 88.2 55 70.9
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 3.1e-16 87.8 55 70.9
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 3.1e-16 87.8 60 65.0
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 8.9e-16 86.3 60 63.3
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 1.5e-15 85.5 60 65.0
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.0e-15 85.1 60 63.3
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 2.6e-15 84.7 54 70.4
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 2.6e-15 84.7 54 70.4
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 2.6e-15 84.7 60 58.3
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 3.4e-15 84.3 55 67.3
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 4.4e-15 84.0 55 69.1
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 7.5e-15 83.2 55 67.3
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.5e-15 83.2 53 69.8
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.7e-14 82.0 60 65.0
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.7e-14 82.0 60 65.0
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.2e-14 81.6 59 72.9
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 3.7e-14 80.9 55 63.6
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 3.7e-14 80.9 56 64.3
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 3.7e-14 80.9 60 58.3
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 4.9e-14 80.5 62 66.1
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 4.9e-14 80.5 62 66.1
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 4.9e-14 80.5 62 66.1
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 4.9e-14 80.5 62 64.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 6.4e-14 80.1 60 58.3
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 6.4e-14 80.1 62 64.5
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 1.4e-13 79.0 60 58.3
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 1.4e-13 79.0 60 58.3
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.4e-13 79.0 56 64.3
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 1.4e-13 79.0 56 64.3
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.9e-13 78.6 62 64.5
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.9e-13 78.6 62 64.5
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.9e-13 78.6 62 64.5
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 1.9e-13 78.6 60 58.3
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.4e-13 78.2 51 68.6
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.4e-13 78.2 56 62.5
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.4e-13 78.2 62 62.9
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 2.4e-13 78.2 60 58.3
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.4e-13 78.2 56 62.5
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.4e-13 78.2 60 60.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 2.4e-13 78.2 60 60.0
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 4.1e-13 77.4 60 65.0
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 4.1e-13 77.4 55 63.6
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 9.2e-13 76.3 62 61.3
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 9.2e-13 76.3 62 61.3
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 9.2e-13 76.3 62 61.3
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 1.2e-12 75.9 47 76.6
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.6e-12 75.5 56 60.7
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 3.5e-12 74.3 56 58.9
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 4.6e-12 73.9 51 66.7
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.6e-12 73.9 56 57.1
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 1.0e-11 72.8 57 57.9
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.0e-11 72.8 48 64.6
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.0e-11 72.8 51 62.7
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 2.3e-11 71.6 48 66.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 6.6e-11 70.1 62 59.7
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 8.6e-11 69.7 50 62.0
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.5e-10 68.9 62 58.1
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 2.5e-10 68.2 50 66.0
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 2.8e-09 64.7 51 62.7
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 5.2e-08 60.5 40 65.0
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.5e-07 58.9 46 60.9
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 2.0e-07 58.5 44 61.4
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.6e-07 58.2 41 63.4
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.6e-07 58.2 41 63.4


User provided reference genes

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