Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 1.5e-21 105.1 48 100.0
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 1.5e-13 78.6 45 77.8
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 2.5e-13 77.8 51 72.5
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 4.3e-13 77.0 41 78.0
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 1.3e-12 75.5 41 80.5
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 1.3e-12 75.5 45 71.1
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 1.6e-12 75.1 41 75.6
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 2.1e-12 74.7 41 75.6
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 8.1e-12 72.8 44 68.2
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 8.1e-12 72.8 44 68.2
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.1e-11 72.4 41 78.0
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 1.1e-11 72.4 41 73.2
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.4e-11 72.0 45 68.9
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.4e-11 72.0 45 68.9
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 1.4e-11 72.0 41 73.2
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 2.4e-11 71.2 41 73.2
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 3.1e-11 70.9 41 73.2
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 3.1e-11 70.9 41 70.7
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 3.1e-11 70.9 40 75.0
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 4.0e-11 70.5 45 66.7
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 4.0e-11 70.5 45 66.7
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 9.0e-11 69.3 45 64.4
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 1.5e-10 68.6 45 62.2
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 3.4e-10 67.4 45 62.2
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 4.5e-10 67.0 41 65.9
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 7.6e-10 66.2 41 65.9
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.0e-09 65.9 47 59.6
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 2.2e-09 64.7 41 63.4
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 2.9e-09 64.3 38 71.1
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 4.9e-09 63.5 40 65.0
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 4.9e-09 63.5 51 54.9
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 1.4e-08 62.0 41 58.5
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 3.2e-08 60.8 37 64.9
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 5.5e-08 60.1 44 61.4
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 7.1e-08 59.7 48 56.2
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 9.3e-08 59.3 41 61.0
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.7e-07 57.8 37 64.9
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.7e-07 57.8 37 64.9
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 6.0e-07 56.6 46 50.0
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.0e-06 55.8 37 64.9
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.0e-06 55.8 37 64.9
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 1.0e-06 55.8 37 64.9
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.8e-06 55.1 46 47.8
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 1.8e-06 55.1 33 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1140 Anthoceros agrestis HOM05D008584 ORTHO05D010813 2.3e-06 54.7 31 61.3
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 2.3e-06 54.7 46 47.8
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 2.3e-06 54.7 46 47.8
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.0e-06 54.3 37 56.8
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.0e-06 54.3 37 56.8
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.0e-06 54.3 37 56.8
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 3.9e-06 53.9 43 48.8
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-06 53.9 46 47.8
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-06 53.9 46 47.8
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-06 53.9 46 47.8
Nn1g07145 Nelumbo nucifera HOM05D008941 ORTHO05D010842 3.9e-06 53.9 34 58.8
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.1e-06 53.5 37 56.8
Os01g0178850 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 5.1e-06 53.5 37 56.8
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 6.7e-06 53.1 46 47.8
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 8.7e-06 52.8 36 55.6
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 8.7e-06 52.8 44 47.7
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 8.7e-06 52.8 37 54.1
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 8.7e-06 52.8 37 54.1
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 8.7e-06 52.8 37 54.1
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 8.7e-06 52.8 37 54.1
Lsat_1_v5_gn_5_100260 Lactuca sativa HOM05D008584 ORTHO05D010813 8.7e-06 52.8 35 54.3
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.7e-06 52.8 37 54.1
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 8.7e-06 52.8 43 46.5


User provided reference genes

Program Settings