Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 3.1e-51 204.9 107 100.0
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.7e-46 189.1 107 92.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.3e-33 146.4 108 72.2
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 3.2e-32 141.7 106 72.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.2e-31 139.8 108 72.2
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.6e-31 139.4 107 68.2
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.6e-31 139.4 108 71.3
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 3.5e-31 138.3 107 67.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 8.7e-30 133.7 108 64.8
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.5e-29 132.9 105 68.6
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 3.3e-29 131.7 107 64.5
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.8e-28 128.6 108 64.8
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 3.6e-28 128.3 108 63.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.8e-28 127.9 108 65.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 4.8e-28 127.9 105 67.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.8e-27 125.9 105 67.6
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.8e-27 125.9 105 67.6
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.8e-27 125.9 105 66.7
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 4.0e-27 124.8 107 61.7
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.2e-26 123.2 110 60.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.2e-26 123.2 109 64.2
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.6e-26 122.1 106 60.4
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.5e-26 121.3 107 61.7
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.3e-25 119.8 107 60.7
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.7e-25 119.4 107 60.7
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 6.4e-25 117.5 108 59.3
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-24 116.7 94 63.8
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 3.2e-24 115.2 109 60.6
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 5.4e-24 114.4 110 60.0
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.6e-23 111.3 107 59.8
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.9e-22 108.2 108 55.6
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 8.7e-22 107.1 108 55.6
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.1e-21 106.7 111 57.7
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.1e-21 106.7 117 58.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 3.3e-21 105.1 110 56.4
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 3.3e-21 105.1 110 57.3
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 5.6e-21 104.4 111 54.1
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 7.4e-21 104.0 109 56.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.6e-20 102.8 107 58.9
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.6e-20 102.8 109 56.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.6e-20 102.8 111 55.0
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.6e-20 102.8 109 56.9
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.1e-20 102.4 109 58.7
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 4.8e-20 101.3 115 54.8
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.8e-19 99.4 108 53.7
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.4e-19 99.0 111 54.1
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 4.0e-19 98.2 111 56.8
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 9.0e-19 97.1 108 52.8
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 9.0e-19 97.1 109 51.4
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.5e-18 96.3 110 55.5
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.5e-18 96.3 110 55.5
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.5e-18 96.3 109 52.3
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.5e-18 96.3 113 54.9
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.0e-18 95.9 113 51.3
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 2.6e-18 95.5 107 50.5
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.4e-18 95.1 104 55.8
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.5e-18 94.7 104 48.1
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 5.8e-18 94.4 110 50.9
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 9.9e-18 93.6 108 50.9
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 9.9e-18 93.6 108 55.6
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.3e-17 93.2 106 53.8
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 4.9e-17 91.3 109 48.6
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 6.4e-17 90.9 110 51.8
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.4e-16 89.0 112 51.8
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 48.1
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 48.1
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 3.2e-16 88.6 108 53.7
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.3e-16 87.0 87 56.3
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 9.3e-16 87.0 104 50.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.5e-15 85.1 104 51.9
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.5e-15 85.1 109 48.6
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.5e-15 85.1 112 48.2
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.6e-15 84.7 99 45.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 6.0e-15 84.3 108 48.1
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.3e-14 83.2 110 47.3
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.8e-14 82.8 93 55.9
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.8e-14 82.8 108 46.3
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.8e-14 82.8 108 46.3
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.8e-14 82.8 113 47.8
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 3.0e-14 82.0 109 46.8
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-14 82.0 113 43.4
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-14 82.0 113 43.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 3.9e-14 81.6 110 47.3
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 6.7e-14 80.9 114 48.2
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.7e-14 80.9 115 50.4
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.7e-14 80.9 110 50.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.1e-13 80.1 112 44.6
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 45.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.5e-13 79.7 106 45.3
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.5e-13 79.7 105 45.7
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.9e-13 79.3 116 44.8
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.5e-13 79.0 97 51.5
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 5.6e-13 77.8 106 44.3
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 9.6e-13 77.0 99 48.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 9.6e-13 77.0 112 49.1
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.3e-12 76.6 109 46.8
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.3e-12 76.6 108 44.4
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.3e-12 76.6 122 45.1
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.3e-12 76.6 105 42.9
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.6e-12 76.3 111 48.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-12 76.3 106 44.3
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.6e-12 76.3 111 45.0
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 46.8
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-12 75.9 111 48.6
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.1e-12 75.9 110 46.4
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 2.8e-12 75.5 110 46.4
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.8e-12 75.5 113 48.7
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.7e-12 75.1 109 45.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 3.7e-12 75.1 112 45.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.8e-12 74.7 108 42.6
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 6.2e-12 74.3 106 41.5
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 8.2e-12 73.9 92 48.9
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 106 45.3
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 106 45.3
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-11 73.6 106 45.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.4e-11 73.2 106 45.3
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.4e-11 73.2 106 45.3
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.8e-11 72.8 108 47.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 4.0e-11 71.6 110 45.5
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 4.0e-11 71.6 110 45.5
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 4.0e-11 71.6 110 45.5
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-11 71.2 110 43.6
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 5.3e-11 71.2 122 43.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.9e-11 70.9 107 42.1
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 6.9e-11 70.9 114 43.0
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.9e-11 70.9 106 45.3
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.9e-11 70.9 106 44.3
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 6.9e-11 70.9 106 44.3
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 6.9e-11 70.9 113 45.1
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.9e-11 70.9 111 45.0
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 6.9e-11 70.9 122 44.3
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.5e-10 69.7 109 41.3
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.0e-10 69.3 112 45.5
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 2.0e-10 69.3 109 41.3
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.4e-10 68.6 108 43.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-09 67.0 106 43.4
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.0e-09 67.0 110 42.7
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.3e-09 66.6 115 45.2
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.7e-09 66.2 39 74.4
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.7e-09 66.2 118 42.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-09 65.5 106 38.7
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-09 65.5 106 38.7
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.9e-09 65.5 97 46.4
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.9e-09 64.7 113 43.4
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 4.9e-09 64.7 118 42.4
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.4e-08 63.2 111 42.3
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.2e-08 61.6 119 40.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 5.5e-08 61.2 38 76.3
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.5e-08 61.2 107 40.2
Prupe.2G015200 Prunus persica HOM05D004268 ORTHO05D004958 7.1e-08 60.8 120 34.2
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 9.3e-08 60.5 111 36.9
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.2e-07 60.1 37 67.6
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 108 38.9
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.7e-07 58.9 96 39.6
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 2.7e-07 58.9 111 41.4
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 1.0e-06 57.0 109 40.4
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 1.8e-06 56.2 109 36.7
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 2.3e-06 55.8 38 71.1
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.7e-06 54.3 38 71.1
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 8.7e-06 53.9 119 36.1


User provided reference genes

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