Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 0.0e+00 1512.7 836 100.0
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 0.0e+00 1200.3 849 82.6
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 1.8e-287 992.6 852 70.7
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 2.0e-275 952.6 850 70.4
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 6.6e-210 734.9 860 55.9
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.2e-206 724.2 866 54.4
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 3.7e-200 702.6 828 58.9
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 1.0e-197 694.5 860 50.6
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 2.1e-195 686.8 860 50.1
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 5.7e-193 678.7 851 53.7
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 2.1e-192 676.8 892 52.5
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.1e-177 627.9 836 53.0
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 1.7e-125 454.5 891 38.6
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 6.6e-117 426.0 873 38.4
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 4.9e-112 409.8 894 37.7
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.4e-106 391.7 873 37.1
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 3.2e-103 380.6 876 36.8
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 4.2e-103 380.2 892 35.2
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.0e-101 375.6 904 34.8
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 7.3e-100 369.4 872 36.0
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 1.6e-99 368.2 874 34.0
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.1e-99 367.9 891 36.1
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.4e-98 364.4 864 36.1
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 4.0e-98 363.6 848 36.9
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.9e-98 362.8 865 35.6
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.5e-97 361.7 864 35.8
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 9.9e-97 359.0 854 36.2
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.7e-96 358.2 877 33.9
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 2.1e-94 351.3 861 35.4
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.5e-94 350.5 888 34.7
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 1.9e-92 344.7 599 40.7
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 4.8e-91 340.1 895 34.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.8e-90 338.2 863 35.1
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 4.0e-90 337.0 837 34.8
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.5e-89 335.1 862 35.8
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 4.5e-89 333.6 854 34.0
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 1.7e-88 331.6 877 33.2
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 2.9e-88 330.9 886 33.5
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 2.9e-88 330.9 856 35.3
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 6.0e-86 323.2 857 32.6
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 1.5e-84 318.5 888 31.6
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.2e-81 308.9 656 36.3
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 5.8e-81 306.6 582 39.5
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 7.6e-81 306.2 851 31.8
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 2.2e-80 304.7 848 31.4
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 3.8e-80 303.9 836 33.1
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.9e-79 301.6 849 31.8
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 2.5e-79 301.2 861 30.9
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 5.5e-79 300.1 870 33.6
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 5.5e-79 300.1 714 36.0
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 5.5e-79 300.1 651 35.3
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 9.3e-79 299.3 910 30.8
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 3.5e-78 297.4 791 33.1
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.8e-75 287.7 588 37.6
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 4.1e-74 283.9 654 34.6
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 6.9e-74 283.1 537 36.7
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.5e-73 282.0 747 32.7
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 3.4e-73 280.8 868 32.6
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 3.4e-73 280.8 625 34.4
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 8.5e-72 276.2 940 28.5
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 9.3e-71 272.7 835 31.6
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 9.3e-71 272.7 835 31.6
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 2.1e-70 271.6 814 33.5
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 7.9e-70 269.6 821 31.1
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 4.3e-68 263.8 576 35.9
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 9.7e-68 262.7 627 33.2
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 6.3e-67 260.0 844 30.5
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 1.8e-66 258.5 853 30.6
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 2.4e-66 258.1 830 31.4
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 3.1e-66 257.7 798 30.1
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 9.0e-66 256.1 829 30.4
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 2.0e-65 255.0 830 31.3
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.6e-65 254.6 817 29.9
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 4.5e-65 253.8 879 29.4
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 1.3e-64 252.3 833 29.9
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 3.8e-64 250.8 819 31.5
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 5.0e-64 250.4 702 32.3
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 5.5e-63 246.9 873 30.1
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 2.3e-61 241.5 905 29.8
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 3.0e-61 241.1 860 29.0
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 5.7e-60 236.9 605 33.4
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.8e-59 234.6 807 29.2
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 6.9e-58 229.9 820 29.8
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 6.9e-58 229.9 849 28.6
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.2e-57 229.2 898 28.0
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 2.0e-57 228.4 692 34.1
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 3.4e-57 227.6 259 50.2
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 4.5e-57 227.3 731 32.0
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 5.9e-57 226.9 798 28.2
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 7.7e-57 226.5 531 33.7
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 2.9e-56 224.6 936 26.1
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 1.0e-53 216.1 932 28.8
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 3.0e-53 214.5 457 36.1
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.1e-52 212.6 476 33.0
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 7.4e-52 209.9 924 26.9
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 2.0e-49 201.8 622 29.1
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 8.0e-46 189.9 596 31.2
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.3e-45 188.3 596 30.9
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 1.5e-44 185.7 594 28.5
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 8.2e-43 179.9 740 27.0
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 6.1e-38 163.7 599 31.7
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 4.8e-35 154.1 906 25.4
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 5.0e-32 144.1 662 27.3
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 8.5e-32 143.3 883 25.1
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 3.2e-31 141.4 618 29.8
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 7.2e-31 140.2 687 27.2
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.8e-26 125.6 157 43.9
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.4e-18 99.4 114 47.4
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 3.3e-07 61.6 297 25.6
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 5.6e-07 60.8 133 31.6
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 9.5e-07 60.1 117 36.8
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 9.5e-07 60.1 117 36.8
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 3.6e-06 58.2 185 33.0


User provided reference genes

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