Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.1e-294 1015.0 519 100.0
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 5.3e-274 947.2 519 92.5
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.1e-255 886.3 521 85.6
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.9e-255 885.6 520 86.0
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 3.0e-253 878.2 520 84.2
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 8.8e-253 876.7 477 93.7
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 9.7e-252 873.2 520 84.2
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.4e-250 868.6 520 84.0
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 4.1e-250 867.8 518 84.6
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.6e-249 865.1 516 83.9
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 2.9e-232 808.5 519 77.6
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.3e-229 798.9 520 76.5
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.4e-226 788.9 515 75.5
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.4e-226 788.9 515 75.1
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 7.2e-223 777.3 512 75.2
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.1e-222 775.8 518 74.9
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 4.7e-222 774.6 514 74.3
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.4e-221 773.1 520 74.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.1e-218 763.5 520 73.1
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 5.4e-218 761.1 517 72.7
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 2.0e-217 759.2 518 73.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 6.6e-216 754.2 528 71.4
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.9e-215 752.7 520 71.5
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.1e-213 745.3 517 72.7
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 7.5e-212 740.7 520 71.2
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 7.5e-212 740.7 525 71.6
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 7.5e-212 740.7 589 64.7
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.9e-211 738.8 519 71.5
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 8.3e-211 737.3 518 71.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.9e-210 736.1 517 70.2
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.4e-210 735.7 520 72.1
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 3.2e-210 735.3 520 71.2
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.6e-209 733.0 513 71.3
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.7e-208 729.6 545 69.0
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 3.9e-208 728.4 504 72.6
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.1e-207 726.9 512 72.1
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 4.3e-207 724.9 512 70.3
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 5.6e-207 724.5 520 69.8
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 9.5e-207 723.8 520 70.4
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.6e-206 723.0 520 70.4
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.1e-206 722.6 523 70.6
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.8e-206 722.2 515 70.5
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.8e-206 722.2 519 69.7
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 8.1e-206 720.7 515 68.3
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 5.2e-205 718.0 524 69.7
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 6.8e-205 717.6 524 69.7
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.6e-204 715.7 512 70.9
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 6.4e-203 711.1 517 68.7
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 8.3e-203 710.7 486 74.9
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.1e-202 710.3 516 68.6
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 2.7e-201 705.7 487 72.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 6.6e-200 701.0 508 70.1
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.6e-198 696.4 509 68.2
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 6.2e-198 694.5 513 68.0
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.6e-196 689.1 513 67.4
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.6e-193 679.9 494 69.6
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 4.6e-193 678.3 624 58.5
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 6.0e-193 677.9 507 68.0
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.7e-192 676.4 472 71.4
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.3e-192 676.0 635 58.0
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 5.6e-191 671.4 517 65.6
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.2e-190 670.2 417 82.0
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.4e-189 666.8 520 66.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 6.8e-189 664.5 550 62.7
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 8.4e-187 657.5 523 62.7
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 9.3e-186 654.1 435 76.8
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.0e-185 651.4 493 68.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.5e-183 646.7 511 65.4
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 7.3e-183 644.4 523 65.2
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.4e-180 635.2 443 70.7
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 2.1e-177 626.3 533 61.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.5e-177 625.5 489 66.7
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.0e-176 622.5 531 61.6
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.3e-175 619.0 446 72.9
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-173 614.0 548 60.0
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 3.1e-173 612.5 519 59.9
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 5.3e-173 611.7 501 62.5
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.9e-173 611.3 425 72.7
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 7.6e-172 607.8 453 67.1
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.7e-171 606.7 409 75.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.1e-170 604.0 458 68.8
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 4.3e-167 592.0 426 71.1
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 7.4e-167 591.3 433 71.1
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.5e-164 582.0 451 65.6
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.5e-164 582.0 498 62.0
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.5e-162 576.2 533 58.7
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.0e-160 569.3 588 54.1
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.6e-156 556.2 522 57.1
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.6e-156 556.2 571 54.5
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.3e-154 547.7 387 72.4
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 4.6e-153 545.4 499 59.3
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 6.7e-152 541.6 557 53.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 6.7e-152 541.6 516 55.0
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 9.0e-149 531.2 423 65.7
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.6e-145 520.4 441 60.5
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.1e-138 497.7 472 57.4
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.5e-138 495.4 427 63.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.7e-137 493.0 459 57.5
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 5.1e-136 488.8 472 56.4
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 2.2e-134 483.4 464 55.8
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.4e-133 479.9 414 63.5
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 3.5e-132 476.1 377 64.7
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.8e-120 437.2 515 46.6
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.1e-117 427.9 392 59.4
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.8e-117 427.2 300 71.7
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 6.1e-113 412.1 292 69.5
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.9e-110 402.5 341 61.9
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.8e-107 392.9 476 45.6
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 3.0e-104 383.3 510 42.2
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.2e-101 371.7 288 68.8
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 1.0e-99 368.2 231 80.1
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.3e-98 362.8 251 71.7
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.0e-91 339.3 436 45.0
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.8e-80 304.3 370 48.4
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.1e-80 303.5 462 43.3
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.8e-79 299.3 206 70.4
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.4e-71 273.5 191 69.6
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.1e-69 268.5 197 75.1
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 8.7e-67 258.8 430 40.0
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 4.3e-66 256.5 184 72.3
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 3.2e-61 240.4 220 61.4
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 8.4e-54 215.7 182 63.7
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-53 214.9 160 66.2
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.2e-53 213.8 198 57.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.5e-50 204.1 584 30.1
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 1.1e-42 178.7 162 62.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 6.9e-40 169.5 464 32.3
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.9e-38 164.1 150 56.0
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 6.7e-35 152.9 96 81.2
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 3.7e-33 147.1 101 80.2
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 2.4e-32 144.4 163 48.5
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.3e-30 138.7 135 49.6
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.5e-30 136.3 146 49.3
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.5e-30 136.3 146 49.3
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.5e-29 134.4 97 57.7
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.6e-28 130.2 93 67.7
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 5.7e-26 123.2 97 57.7
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.4e-24 118.6 78 65.4
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 3.1e-24 117.5 550 26.7
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.9e-24 116.3 86 61.6
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.2e-21 107.5 71 71.8
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.1e-20 104.8 67 80.6
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.8e-19 101.7 89 62.9
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-18 98.2 63 81.0
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-18 98.2 63 81.0
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.3e-17 95.5 56 85.7
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.8e-16 91.7 112 42.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.2e-15 89.0 236 32.2
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 1.0e-11 75.9 82 56.1
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.8e-11 75.1 37 91.9
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.2e-11 73.6 55 72.7
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.8e-09 67.8 54 51.9


User provided reference genes

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