Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 8.1e-28 126.3 63 100.0
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 4.5e-26 120.6 63 95.2
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 6.0e-23 110.2 64 90.6
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 3.7e-20 100.9 60 80.0
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 4.8e-20 100.5 64 82.8
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 1.1e-19 99.4 60 80.0
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 3.1e-19 97.8 60 78.3
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 4.1e-19 97.4 62 75.8
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 6.9e-19 96.7 56 82.1
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 1.5e-18 95.5 62 74.2
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 4.5e-18 94.0 61 75.4
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 5.9e-18 93.6 61 77.0
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 1.3e-17 92.4 59 78.0
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 5.0e-17 90.5 61 75.4
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 5.0e-17 90.5 61 77.0
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 8.5e-17 89.7 54 81.5
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 8.5e-17 89.7 56 75.0
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 8.5e-17 89.7 56 75.0
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.1e-16 89.4 56 76.8
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.1e-16 89.4 61 72.1
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.4e-16 89.0 56 76.8
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.4e-16 89.0 56 76.8
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 2.5e-16 88.2 60 75.0
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 2.5e-16 88.2 53 79.2
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 4.2e-16 87.4 55 76.4
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 9.3e-16 86.3 62 74.2
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 9.3e-16 86.3 58 72.4
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 1.2e-15 85.9 57 71.9
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 1.3e-14 82.4 61 68.9
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 1.3e-14 82.4 52 76.9
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 3.0e-14 81.3 62 67.7
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 3.0e-14 81.3 53 75.5
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 6.7e-14 80.1 53 71.7
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 6.7e-14 80.1 50 76.0
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 8.7e-14 79.7 51 76.5
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 8.7e-14 79.7 56 73.2
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.1e-13 79.3 52 76.9
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.5e-13 79.0 54 70.4
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 1.5e-13 79.0 61 63.9
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 4.3e-13 77.4 53 69.8
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 7.4e-13 76.6 59 66.1
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 1.3e-12 75.9 59 66.1
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 2.8e-12 74.7 44 75.0
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 2.8e-12 74.7 44 75.0
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 2.8e-12 74.7 53 67.9
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 4.8e-12 73.9 44 77.3
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 6.3e-12 73.6 49 67.3
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 8.2e-12 73.2 59 62.7
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 8.2e-12 73.2 59 62.7
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 1.1e-11 72.8 52 63.5
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.8e-11 72.0 52 61.5
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 1.8e-11 72.0 51 68.6
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 1.8e-11 72.0 50 72.0
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 2.4e-11 71.6 59 62.7
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 4.1e-11 70.9 45 75.6
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 2.0e-10 68.6 44 68.2
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 2.0e-10 68.6 41 73.2
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 1.0e-09 66.2 53 58.5
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 1.7e-09 65.5 49 61.2
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 5.5e-08 60.5 34 76.5
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 7.2e-08 60.1 34 79.4
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.6e-07 58.9 38 76.3
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 1.0e-06 56.2 54 50.0
Sabra06G0129100 Salix brachista HOM05D008240 ORTHO05D010333 1.8e-06 55.5 45 64.4
Sabra12G0001400 Salix brachista HOM05D008240 ORTHO05D010333 1.8e-06 55.5 45 64.4
Ah.05g180620 Amaranthus hybridus HOM05D011433 ORTHO05D013366 6.7e-06 53.5 42 54.8


User provided reference genes

Program Settings