Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.7e-56 221.1 121 100.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.8e-52 209.1 121 95.9
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.5e-51 204.5 120 93.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.7e-50 202.6 121 92.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 2.2e-50 202.2 121 92.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 8.5e-50 200.3 121 90.9
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 9.4e-49 196.8 121 89.3
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.2e-48 196.4 121 88.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.7e-48 195.3 119 88.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.6e-48 194.9 119 88.2
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 6.1e-48 194.1 121 87.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-47 191.8 121 87.6
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.0e-47 191.4 119 87.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.7e-46 187.6 121 85.1
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 5.7e-46 187.6 118 85.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 5.7e-46 187.6 119 85.7
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.3e-45 186.4 116 86.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.3e-45 186.4 119 87.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.2e-45 185.7 120 83.3
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 2.8e-45 185.3 118 86.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.7e-45 184.9 121 82.6
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 6.3e-45 184.1 119 82.4
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.8e-44 182.6 116 83.6
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.4e-44 182.2 119 84.9
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.4e-44 182.2 119 84.9
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.4e-44 182.2 125 84.0
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 3.1e-44 181.8 119 82.4
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 4.1e-44 181.4 119 82.4
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 4.1e-44 181.4 121 81.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 5.4e-44 181.0 118 83.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 5.4e-44 181.0 119 82.4
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 7.0e-44 180.6 119 79.8
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 9.1e-44 180.3 121 82.6
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-43 179.9 118 83.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-43 179.9 118 82.2
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 82.6
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 82.6
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.6e-43 179.5 119 80.7
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 2.7e-43 178.7 106 93.4
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 3.5e-43 178.3 114 83.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.5e-43 178.3 117 82.1
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.5e-43 178.3 117 82.1
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 3.5e-43 178.3 119 81.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.5e-43 177.9 121 81.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 4.5e-43 177.9 119 83.2
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 5.9e-43 177.6 121 84.3
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 7.7e-43 177.2 117 82.1
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 1.0e-42 176.8 117 82.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 1.0e-42 176.8 117 82.1
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.0e-42 176.8 118 82.2
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.0e-42 176.8 118 82.2
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.3e-42 176.4 120 81.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.3e-42 176.4 120 81.7
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.3e-42 176.4 114 81.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-42 176.0 119 81.5
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.7e-42 176.0 120 81.7
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.7e-42 176.0 115 81.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-42 175.3 119 81.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 3.8e-42 174.9 118 80.5
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 3.8e-42 174.9 118 80.5
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 3.8e-42 174.9 118 83.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 5.0e-42 174.5 118 81.4
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.0e-42 174.5 109 83.5
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 8.5e-42 173.7 119 79.0
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.9e-41 172.6 115 80.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.2e-41 171.4 117 80.3
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.6e-40 169.5 118 74.6
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.6e-40 169.5 115 80.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 4.7e-40 167.9 120 78.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.7e-40 167.9 120 77.5
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 8.0e-40 167.2 119 76.5
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 1.0e-39 166.8 119 76.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.0e-39 166.8 111 79.3
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-39 166.4 119 77.3
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.4e-39 166.4 101 86.1
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 118 78.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 86.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 86.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 86.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 86.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 6.8e-39 164.1 119 77.3
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 8.8e-39 163.7 113 77.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 8.8e-39 163.7 118 77.1
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 8.8e-39 163.7 115 77.4
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.2e-38 163.3 119 73.1
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.2e-38 163.3 106 81.1
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 100 85.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.5e-38 162.9 117 74.4
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.5e-38 162.9 115 76.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.6e-38 162.2 102 82.4
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 9.8e-38 160.2 105 81.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 9.8e-38 160.2 116 75.0
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 9.8e-38 160.2 116 75.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 9.8e-38 160.2 119 74.8
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.3e-37 159.8 117 73.5
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.2e-37 159.1 118 72.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.2e-37 159.1 112 71.4
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 116 73.3
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.8e-37 158.7 116 73.3
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.7e-37 158.3 116 73.3
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 4.9e-37 157.9 116 73.3
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 8.3e-37 157.1 114 75.4
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.1e-36 156.8 103 78.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.4e-36 155.6 116 75.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.4e-36 155.6 115 73.0
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.1e-36 154.8 125 69.6
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 5.4e-36 154.5 119 73.1
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.6e-35 152.9 113 70.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.6e-35 152.9 120 69.2
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 2.7e-35 152.1 118 72.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 4.5e-35 151.4 105 80.0
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 7.8e-35 150.6 98 78.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-34 150.2 115 73.0
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.3e-34 149.8 120 67.5
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.8e-34 148.3 109 68.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 5.6e-33 144.4 96 76.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.1e-32 142.5 121 67.8
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 3.6e-32 141.7 121 64.5
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.7e-32 141.4 89 86.5
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.0e-32 140.6 85 84.7
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-31 139.8 102 75.5
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.3e-31 139.0 109 71.6
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.0e-27 125.9 85 78.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.6e-27 124.8 103 66.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 5.0e-26 121.3 111 58.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.5e-25 119.0 111 60.4
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.3e-25 118.6 87 75.9
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.3e-25 118.6 87 75.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.5e-22 109.8 67 85.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-22 108.2 69 81.2
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.3e-21 106.7 117 62.4
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.2e-21 105.9 69 79.7
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.1e-20 103.6 68 77.9
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 4.1e-20 101.7 70 75.7
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 2.7e-19 99.0 64 73.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 3.5e-19 98.6 100 52.0
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.9e-18 95.1 74 70.3
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-16 90.1 73 68.5
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-16 89.4 85 61.2
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.8e-15 86.3 56 80.4
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.3e-15 85.9 57 78.9
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.8e-15 84.3 72 68.1
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 8.9e-15 84.0 50 90.0
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.9e-13 79.0 91 51.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 6.4e-13 77.8 120 42.5
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 9.2e-12 73.9 103 44.7
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-11 73.6 82 54.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 6.6e-10 67.8 69 58.0
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 8.6e-10 67.4 53 66.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-09 66.6 56 62.5
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 9.5e-09 63.9 52 65.4
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.6e-08 63.2 44 72.7
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.1e-08 62.8 60 55.0
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.7e-08 61.6 38 78.9
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 6.2e-08 61.2 75 50.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 2.3e-07 59.3 122 34.4
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 3.4e-06 55.5 46 65.2


User provided reference genes

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