Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 7.3e-158 561.6 608 100.0
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 2.3e-95 354.0 616 84.6
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 5.7e-86 322.8 620 81.0
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 5.0e-82 309.7 624 80.3
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.3e-77 295.0 633 52.4
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 3.1e-71 273.9 560 72.3
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 1.2e-59 235.3 624 73.1
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 2.5e-49 201.1 622 67.2
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.3e-49 200.3 622 66.9
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.9e-44 184.9 616 71.3
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.9e-42 177.2 324 69.4
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 3.3e-41 174.1 291 63.2
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.6e-40 171.8 324 67.6
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 6.2e-40 169.9 209 79.4
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.2e-40 169.9 209 79.4
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.0e-39 167.2 324 68.2
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 6.9e-39 166.4 324 69.1
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.4e-38 164.1 324 67.6
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 7.1e-36 156.4 188 78.2
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 9.3e-36 156.0 200 76.0
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.7e-35 154.5 200 75.5
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.7e-35 154.5 201 75.6
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.6e-35 153.7 200 75.5
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.0e-35 153.3 188 77.7
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.0e-34 152.5 293 51.9
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.0e-34 152.5 203 73.4
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.3e-34 152.1 203 73.4
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.7e-34 151.8 230 67.4
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.7e-34 151.8 200 74.5
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 3.0e-34 151.0 295 51.5
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 3.0e-34 151.0 293 51.5
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.0e-34 151.0 230 67.8
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 3.9e-34 150.6 292 51.7
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 8.7e-34 149.4 226 68.6
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.1e-33 149.1 292 32.5
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.9e-33 148.3 230 67.0
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 3.3e-33 147.5 188 77.7
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 5.6e-33 146.7 225 65.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 9.6e-33 146.0 308 31.2
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.3e-32 145.6 288 51.4
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.6e-32 145.2 317 31.5
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.6e-32 145.2 230 64.8
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 2.8e-32 144.4 231 67.1
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 4.8e-32 143.7 301 48.5
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 8.1e-32 142.9 294 53.4
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 1.1e-31 142.5 223 69.5
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 1.8e-31 141.7 230 64.8
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 3.1e-31 141.0 289 37.4
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 4.0e-31 140.6 189 74.1
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 4.0e-31 140.6 220 66.4
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 9.0e-31 139.4 195 72.8
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.2e-30 139.0 334 33.5
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.0e-30 138.3 189 74.1
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 4.5e-30 137.1 196 70.9
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 4.5e-30 137.1 227 63.4
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 5.8e-30 136.7 187 76.5
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 9.9e-30 136.0 193 68.9
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 1.7e-29 135.2 167 86.2
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 1.7e-29 135.2 187 75.9
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.7e-29 135.2 184 76.6
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 2.2e-29 134.8 196 67.3
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 2.9e-29 134.4 187 76.5
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 3.8e-29 134.0 231 65.4
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 3.8e-29 134.0 238 60.9
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.8e-29 134.0 187 76.5
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.8e-29 134.0 187 76.5
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 3.8e-29 134.0 188 69.7
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 4.9e-29 133.7 284 72.5
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 8.4e-29 132.9 229 63.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 1.4e-28 132.1 197 72.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 1.9e-28 131.7 203 68.5
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.9e-28 131.7 284 71.1
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 3.2e-28 131.0 265 55.1
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.2e-28 131.0 229 62.9
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 3.2e-28 131.0 188 75.0
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 3.2e-28 131.0 178 78.1
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 4.2e-28 130.6 258 57.0
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 5.4e-28 130.2 196 69.9
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 1.6e-27 128.6 258 57.0
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 2.1e-27 128.3 273 54.2
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 2.1e-27 128.3 257 56.8
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 2.1e-27 128.3 296 28.0
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 3.5e-27 127.5 226 63.3
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 4.6e-27 127.1 257 57.2
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 4.6e-27 127.1 197 71.6
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 6.0e-27 126.7 231 60.2
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 1.0e-26 125.9 196 69.4
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.3e-26 125.6 257 56.8
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.8e-26 125.2 227 63.9
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 3.0e-26 124.4 195 69.2
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 3.0e-26 124.4 224 63.4
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 5.1e-26 123.6 231 64.1
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 5.1e-26 123.6 231 64.1
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.1e-26 123.6 198 66.2
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.1e-26 123.6 205 62.9
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.9e-25 121.7 188 73.4
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.5e-25 121.3 188 68.1
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 3.3e-25 120.9 188 36.7
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 7.4e-25 119.8 200 66.0
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 7.4e-25 119.8 200 66.0
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 7.4e-25 119.8 205 45.4
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 2.1e-24 118.2 186 68.8
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 2.1e-24 118.2 186 68.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 2.1e-24 118.2 188 62.2
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 3.7e-24 117.5 188 63.8
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 6.2e-24 116.7 222 62.6
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.1e-23 115.9 270 29.6
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.1e-23 115.9 185 44.3
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 1.4e-23 115.5 229 63.8
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.4e-23 115.5 222 63.1
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 2.4e-23 114.8 185 74.6
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 3.1e-23 114.4 165 72.1
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.9e-23 113.2 200 69.0
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.2e-22 112.5 211 46.4
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 1.2e-22 112.5 192 71.4
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.2e-22 112.5 231 60.6
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 2.0e-22 111.7 73 71.2
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.6e-22 111.3 166 75.3
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 5.8e-22 110.2 185 67.6
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 7.6e-22 109.8 188 66.0
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 7.6e-22 109.8 195 60.5
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 9.9e-22 109.4 188 35.1
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 4.9e-21 107.1 198 65.7
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 8.4e-21 106.3 286 51.7
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 1.1e-20 105.9 185 64.3
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 3.2e-20 104.4 70 72.9
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 4.2e-20 104.0 193 69.9
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 5.5e-20 103.6 75 65.3
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 5.5e-20 103.6 108 52.8
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 7.1e-20 103.2 290 59.3
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 7.1e-20 103.2 190 65.8
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 9.3e-20 102.8 221 55.7
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.2e-19 102.4 193 64.2
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.7e-19 101.3 198 60.1
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.6e-19 100.5 193 63.7
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.6e-19 100.5 193 63.7
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 4.6e-19 100.5 75 64.0
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 6.0e-19 100.1 224 41.1
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.0e-18 99.4 194 62.4
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 3.0e-18 97.8 186 62.9
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 3.0e-18 97.8 217 54.8
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.9e-18 97.4 186 64.5
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 3.9e-18 97.4 193 64.8
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 3.9e-18 97.4 217 55.3
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 6.7e-18 96.7 198 61.6
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 8.7e-18 96.3 186 64.0
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 8.7e-18 96.3 80 62.5
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.1e-17 95.9 221 54.3
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 1.5e-17 95.5 167 73.7
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 1.9e-17 95.1 193 62.7
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 2.5e-17 94.7 191 67.5
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 2.5e-17 94.7 186 65.1
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 4.3e-17 94.0 220 59.5
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.6e-17 93.6 81 58.0
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 9.6e-17 92.8 208 45.2
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.3e-16 92.4 167 70.1
Psat7g013440 Pisum sativum HOM05D003689 ORTHO05D003950 1.6e-16 92.0 125 65.6
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 2.8e-16 91.3 98 51.0
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.8e-16 91.3 210 46.2
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 3.7e-16 90.9 216 30.1
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 6.2e-16 90.1 74 59.5
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 8.2e-16 89.7 157 32.5
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.4e-15 89.0 179 64.2
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.4e-15 89.0 70 60.0
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.4e-15 88.2 195 60.5
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 7.6e-14 83.2 261 28.0
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.3e-13 82.4 77 53.2
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 1.3e-13 82.4 186 59.7
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 1.3e-13 82.4 186 59.7
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 4.9e-13 80.5 107 44.9
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 2.5e-12 78.2 85 40.0
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 7.1e-12 76.6 98 40.8
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 3.5e-11 74.3 94 40.4
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 1.8e-10 72.0 62 62.9
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.3e-10 71.6 46 58.7
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 1.1e-09 69.3 44 65.9
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 1.1e-09 69.3 47 59.6
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 2.5e-09 68.2 44 59.1
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.7e-09 67.0 135 37.0
MD02G1045000 Malus domestica HOM05D003689 ORTHO05D003950 5.7e-09 67.0 117 37.6
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.3e-08 65.9 41 65.9
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 1.6e-08 65.5 79 46.8
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 2.2e-08 65.1 52 55.8
Pp3c16_9240 Physcomitrium patens HOM05D041143 ORTHO05D003950 4.1e-07 60.8 192 52.1
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 5.9e-06 57.0 50 54.0


User provided reference genes

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