Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 5.6e-150 534.3 272 100.0
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 4.2e-121 438.3 279 83.9
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.3e-117 426.8 240 90.8
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 2.9e-114 415.6 274 79.6
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 2.3e-111 406.0 268 77.6
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 5.7e-110 401.4 278 77.0
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 2.4e-108 396.0 232 87.9
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 3.1e-108 395.6 277 72.9
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.3e-106 390.2 281 73.7
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 4.2e-105 385.2 274 74.5
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 4.6e-104 381.7 277 71.1
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 1.8e-103 379.8 272 72.8
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 8.8e-103 377.5 278 71.2
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 7.4e-102 374.4 279 70.6
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.7e-101 373.2 284 69.0
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 2.8e-101 372.5 286 68.9
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 9.1e-100 367.5 289 67.5
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 2.0e-99 366.3 284 67.6
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 2.6e-99 365.9 284 69.0
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 4.5e-99 365.2 286 69.9
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 1.0e-98 364.0 290 69.0
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 1.3e-98 363.6 280 68.9
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 8.5e-98 360.9 282 68.4
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 1.1e-97 360.5 283 69.3
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.9e-97 359.8 278 68.7
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.2e-97 359.0 280 67.9
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 5.5e-97 358.2 280 67.9
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 2.1e-96 356.3 284 68.0
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 2.7e-96 355.9 257 69.6
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 7.9e-96 354.4 225 77.3
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 8.8e-95 350.9 281 66.5
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 2.0e-94 349.7 278 67.3
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 9.7e-94 347.4 265 68.3
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 2.8e-93 345.9 224 77.2
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 3.7e-93 345.5 251 71.7
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 6.3e-93 344.7 281 66.9
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 8.2e-93 344.4 277 65.7
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 8.2e-93 344.4 285 67.0
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 1.1e-92 344.0 281 65.5
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.1e-92 344.0 272 66.9
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.4e-92 342.8 285 66.0
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 3.1e-92 342.4 232 74.6
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 5.3e-92 341.7 233 74.7
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 9.1e-92 340.9 224 75.4
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 1.2e-91 340.5 224 72.3
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 1.6e-91 340.1 224 75.4
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 1.6e-91 340.1 222 73.4
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 5.9e-91 338.2 282 64.9
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.0e-90 337.4 221 74.7
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 1.3e-90 337.0 277 65.7
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.7e-90 336.7 229 72.5
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 2.9e-90 335.9 278 65.1
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 3.8e-90 335.5 222 72.1
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.9e-89 333.2 223 75.8
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 1.9e-89 333.2 224 73.2
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 4.2e-89 332.0 240 71.2
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 4.2e-89 332.0 229 73.8
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 4.2e-89 332.0 253 69.2
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 7.2e-89 331.3 251 67.3
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 7.2e-89 331.3 222 73.0
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 9.4e-89 330.9 221 73.3
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 8.8e-87 324.3 232 70.3
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 2.0e-86 323.2 209 78.0
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 5.7e-86 321.6 252 64.3
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 2.8e-85 319.3 220 70.5
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 6.3e-85 318.2 228 69.3
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 8.2e-85 317.8 248 64.5
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.4e-84 317.0 230 69.6
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.6e-83 313.5 235 67.7
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 2.0e-83 313.2 262 61.5
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 2.0e-83 313.2 376 50.8
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 2.7e-83 312.8 228 70.6
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 1.7e-82 310.1 225 67.6
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 1.5e-81 307.0 190 80.5
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 3.2e-81 305.8 223 69.1
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 3.2e-81 305.8 222 68.9
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 2.1e-80 303.1 227 69.2
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 8.0e-80 301.2 238 65.5
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 2.6e-78 296.2 183 80.3
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 2.2e-74 283.1 222 66.2
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 3.0e-71 272.7 242 59.9
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.4e-68 263.1 193 69.9
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 7.7e-67 258.1 246 56.1
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 8.6e-66 254.6 226 65.5
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 1.5e-65 253.8 279 52.7
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 5.6e-65 251.9 188 69.1
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 4.0e-63 245.7 236 53.8
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 5.2e-63 245.4 154 81.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 2.6e-62 243.0 182 65.4
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.7e-61 240.4 246 56.9
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 1.7e-61 240.4 225 54.7
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 3.5e-59 232.6 410 41.0
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 8.6e-58 228.0 143 76.2
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 3.3e-57 226.1 203 53.7
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 5.2e-55 218.8 196 59.7
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.9e-55 218.0 199 60.3
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 6.4e-53 211.8 146 69.2
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 6.8e-47 191.8 143 67.8
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 8.6e-34 148.3 88 85.2
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.5e-33 147.5 172 50.0
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 3.4e-30 136.3 105 63.8
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.9e-29 133.3 144 44.4
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 6.6e-26 122.1 259 34.4
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 3.3e-25 119.8 287 31.7
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 3.8e-21 106.3 60 83.3
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 4.6e-11 72.8 239 28.0
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 6.0e-11 72.4 115 40.0
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.9e-11 72.0 38 86.8
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.9e-11 72.0 38 86.8
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 3.9e-10 69.7 38 84.2
SEGI_22906 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 8.7e-10 68.6 236 28.0
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 3.3e-09 66.6 238 28.6
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 9.6e-09 65.1 243 26.7
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 1.3e-08 64.7 236 27.5
Psat7g265360 Pisum sativum HOM05D007122 ORTHO05D008918 1.3e-08 64.7 49 69.4
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 4.8e-08 62.8 172 32.0
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 8.1e-08 62.0 236 26.7
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 1.1e-07 61.6 54 53.7
Atru.chr6.1613 Acer truncatum HOM05D002234 ORTHO05D002254 1.4e-07 61.2 230 28.3
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 2.4e-07 60.5 238 27.7
Thecc.03G308900 Theobroma cacao HOM05D002234 ORTHO05D002254 2.4e-07 60.5 238 25.6
CANSAT56G3028 Cannabis sativa HOM05D002234 ORTHO05D002254 5.3e-07 59.3 145 31.0
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.2e-06 58.2 110 30.9
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 1.2e-06 58.2 238 23.1
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 2.0e-06 57.4 246 24.0
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 2.6e-06 57.0 95 36.8
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 2.6e-06 57.0 95 36.8
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.6e-06 57.0 91 41.8
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 3.4e-06 56.6 220 27.7
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 3.4e-06 56.6 262 26.3
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 4.5e-06 56.2 220 27.3
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 5.8e-06 55.8 262 26.7


User provided reference genes

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