Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 2.1e-39 165.2 84 100.0
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.8e-31 138.3 84 85.7
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 2.0e-29 132.1 87 78.2
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.7e-28 129.0 77 83.1
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.2e-28 128.6 82 80.5
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 4.9e-28 127.5 84 73.8
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.9e-27 125.6 84 73.8
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.0e-26 122.1 84 70.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.0e-26 122.1 85 69.4
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 3.5e-26 121.3 73 82.2
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.0e-25 118.2 85 69.4
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 5.0e-25 117.5 78 74.4
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 6.6e-25 117.1 70 80.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 8.6e-25 116.7 84 73.8
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.9e-24 115.5 84 67.9
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.9e-24 115.5 79 67.1
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 3.3e-24 114.8 84 67.9
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 3.3e-24 114.8 84 65.5
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 3.3e-24 114.8 84 69.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 5.6e-24 114.0 83 66.3
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 7.3e-24 113.6 82 67.1
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 9.5e-24 113.2 92 62.0
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.2e-23 112.8 81 67.9
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.2e-23 112.8 84 67.9
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.2e-23 112.8 84 64.3
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.1e-23 112.1 92 65.2
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 4.7e-23 110.9 89 61.8
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 4.7e-23 110.9 85 63.5
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 6.2e-23 110.5 84 63.1
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 6.2e-23 110.5 77 67.5
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 6.2e-23 110.5 77 67.5
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 8.1e-23 110.2 74 68.9
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 8.1e-23 110.2 72 73.6
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.1e-22 109.8 86 62.8
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.1e-22 109.8 77 66.2
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.8e-22 109.0 82 68.3
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.8e-22 109.0 97 61.9
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 3.1e-22 108.2 89 61.8
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 3.1e-22 108.2 94 58.5
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 3.1e-22 108.2 80 65.0
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 5.2e-22 107.5 81 63.0
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 5.2e-22 107.5 69 71.0
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 6.8e-22 107.1 84 63.1
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 6.8e-22 107.1 78 64.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.5e-21 105.9 78 64.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.5e-21 105.9 78 64.1
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.0e-21 105.5 73 68.5
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 7.5e-21 103.6 70 65.7
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 9.9e-21 103.2 81 61.7
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 9.9e-21 103.2 68 69.1
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.7e-20 102.4 82 59.8
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.2e-20 102.1 84 61.9
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.2e-20 102.1 84 61.9
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 2.9e-20 101.7 79 62.0
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 3.7e-20 101.3 83 60.2
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.7e-20 101.3 84 61.9
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 6.4e-20 100.5 68 67.6
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 6.4e-20 100.5 72 62.5
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 8.3e-20 100.1 83 55.4
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.4e-19 99.4 84 58.3
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.4e-19 99.4 75 61.3
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.9e-19 99.0 68 69.1
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 3.2e-19 98.2 62 67.7
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 4.1e-19 97.8 87 63.2
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 5.4e-19 97.4 74 63.5
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 5.4e-19 97.4 79 59.5
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 7.1e-19 97.1 92 55.4
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.2e-18 96.3 78 65.4
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.1e-18 95.5 76 57.9
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 6.0e-18 94.0 90 54.4
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.0e-17 93.2 77 62.3
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 6.6e-17 90.5 84 59.5
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.1e-16 89.7 62 61.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.5e-16 88.6 80 55.0
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.5e-16 88.6 83 60.2
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-15 86.3 62 61.3
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-15 86.3 62 61.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.2e-15 86.3 69 58.0
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.6e-15 85.9 63 60.3
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.8e-15 85.1 82 52.4
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.6e-15 84.7 69 58.0
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.6e-15 84.7 68 57.4
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 4.7e-15 84.3 87 50.6
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 6.2e-15 84.0 84 52.4
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-14 83.2 61 60.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.1e-14 83.2 61 60.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.1e-14 83.2 78 51.3
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.1e-14 81.6 84 48.8
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 6.8e-14 80.5 74 54.1
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.2e-13 79.7 87 48.3
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.2e-13 79.7 117 40.2
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.5e-13 79.3 55 61.8
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.0e-13 79.0 73 53.4
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 2.0e-13 79.0 83 49.4
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.4e-13 77.8 88 45.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 4.4e-13 77.8 81 48.1
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 2.2e-12 75.5 56 60.7
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 3.8e-12 74.7 82 48.8
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 3.8e-12 74.7 82 48.8
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 3.8e-12 74.7 82 48.8
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 4.9e-12 74.3 54 64.8
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 4.9e-12 74.3 81 49.4
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 8.4e-12 73.6 68 51.5
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.9e-11 72.4 63 54.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.4e-11 72.0 87 44.8
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.4e-11 72.0 56 57.1
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 3.2e-11 71.6 80 47.5
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 7.1e-11 70.5 57 52.6
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.6e-10 69.3 57 54.4
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.1e-10 68.9 70 48.6
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 2.1e-10 68.9 57 56.1
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 7.8e-10 67.0 55 52.7
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 7.8e-10 67.0 43 58.1
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 7.8e-10 67.0 63 46.0
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.0e-09 66.6 58 56.9
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.3e-09 65.5 172 30.2
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 3.0e-09 65.1 58 51.7
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 5.1e-09 64.3 59 50.8
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 8.7e-09 63.5 46 50.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.1e-08 63.2 61 47.5
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 1.5e-08 62.8 42 57.1
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.5e-08 62.0 42 59.5
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 3.3e-08 61.6 63 47.6
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 9.6e-08 60.1 57 42.1
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 9.6e-08 60.1 40 55.0
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 2.8e-07 58.5 105 37.1
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.6e-07 58.2 44 50.0
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 3.6e-07 58.2 54 48.1
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 4.0e-06 54.7 65 43.1


User provided reference genes

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