Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 5.2e-20 100.1 52 100.0
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 1.2e-19 99.0 52 96.2
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 7.7e-16 86.3 51 82.4
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 3.8e-15 84.0 51 78.4
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 8.5e-15 82.8 51 78.4
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 3.2e-14 80.9 51 78.4
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 4.7e-13 77.0 49 79.6
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 6.1e-13 76.6 51 74.5
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 1.0e-12 75.9 51 76.5
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 1.4e-12 75.5 51 72.5
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 2.3e-12 74.7 49 77.6
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 2.3e-12 74.7 51 72.5
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 2.3e-12 74.7 51 72.5
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 4.0e-12 73.9 51 74.5
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 5.2e-12 73.6 51 70.6
VMungo0331G0997 Vigna mungo HOM05D004080 ORTHO05D003844 6.8e-12 73.2 51 68.6
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 8.8e-12 72.8 51 76.5
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 8.8e-12 72.8 51 74.5
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 8.8e-12 72.8 51 72.5
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 8.8e-12 72.8 51 72.5
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 8.8e-12 72.8 51 72.5
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 8.8e-12 72.8 51 68.6
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 1.5e-11 72.0 51 70.6
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 1.5e-11 72.0 51 68.6
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 2.0e-11 71.6 51 64.7
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 2.6e-11 71.2 51 70.6
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.6e-11 71.2 51 72.5
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 2.6e-11 71.2 51 70.6
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 2.6e-11 71.2 51 68.6
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 3.4e-11 70.9 51 64.7
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 3.4e-11 70.9 51 64.7
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 4.4e-11 70.5 51 68.6
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 4.4e-11 70.5 51 64.7
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 4.4e-11 70.5 51 66.7
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 5.7e-11 70.1 51 64.7
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 5.7e-11 70.1 51 60.8
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 5.7e-11 70.1 51 64.7
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 5.7e-11 70.1 51 66.7
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 7.5e-11 69.7 51 68.6
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 7.5e-11 69.7 51 68.6
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 7.5e-11 69.7 51 68.6
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 7.5e-11 69.7 51 68.6
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 9.8e-11 69.3 51 64.7
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 9.8e-11 69.3 51 66.7
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 9.8e-11 69.3 51 62.7
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 9.8e-11 69.3 51 66.7
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 1.3e-10 68.9 51 60.8
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.3e-10 68.9 51 62.7
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 1.3e-10 68.9 51 62.7
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 1.7e-10 68.6 51 66.7
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 1.7e-10 68.6 51 60.8
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 1.7e-10 68.6 51 64.7
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 1.7e-10 68.6 51 64.7
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 1.7e-10 68.6 49 67.3
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.7e-10 68.6 51 60.8
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 2.2e-10 68.2 51 66.7
Medtr2g105230 Medicago truncatula HOM05D003385 ORTHO05D003844 2.2e-10 68.2 49 69.4
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.2e-10 68.2 51 68.6
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 2.8e-10 67.8 51 66.7
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.8e-10 67.8 51 62.7
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 3.7e-10 67.4 51 58.8
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 3.7e-10 67.4 51 64.7
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 3.7e-10 67.4 51 66.7
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 3.7e-10 67.4 51 66.7
Medtr4g007230 Medicago truncatula HOM05D003385 ORTHO05D003844 3.7e-10 67.4 49 67.3
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 3.7e-10 67.4 51 62.7
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 4.8e-10 67.0 51 62.7
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 4.8e-10 67.0 49 65.3
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 6.3e-10 66.6 51 62.7
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 6.3e-10 66.6 51 60.8
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 8.3e-10 66.2 48 60.4
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 8.3e-10 66.2 48 60.4
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 8.3e-10 66.2 51 66.7
A04p27190 Brassica napus HOM05D003385 ORTHO05D003844 1.1e-09 65.9 51 56.9
BraA04t18217Z Brassica rapa HOM05D003385 ORTHO05D003844 1.1e-09 65.9 51 56.9
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 1.1e-09 65.9 51 64.7
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 1.1e-09 65.9 51 64.7
BcaC02g07674 Brassica carinata HOM05D003385 ORTHO05D003844 1.4e-09 65.5 51 56.9
C04p64700 Brassica napus HOM05D003385 ORTHO05D003844 1.4e-09 65.5 51 56.9
BolC4t27948H Brassica oleracea HOM05D003385 ORTHO05D003844 1.4e-09 65.5 51 56.9
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 1.4e-09 65.5 51 60.8
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 1.8e-09 65.1 51 58.8
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.8e-09 65.1 51 60.8
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 1.8e-09 65.1 49 65.3
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 1.8e-09 65.1 49 65.3
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 2.4e-09 64.7 51 62.7
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 2.4e-09 64.7 49 67.3
BcaC09g50363 Brassica carinata HOM05D003385 ORTHO05D003844 3.1e-09 64.3 51 58.8
C01p26210 Brassica napus HOM05D003385 ORTHO05D003844 3.1e-09 64.3 51 58.8
BolC1t02564H Brassica oleracea HOM05D003385 ORTHO05D003844 3.1e-09 64.3 51 58.8
BolC1t02565H Brassica oleracea HOM05D003385 ORTHO05D003844 3.1e-09 64.3 51 58.8
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.1e-09 64.3 51 56.9
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 3.1e-09 64.3 49 63.3
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 3.1e-09 64.3 51 62.7
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 4.1e-09 63.9 51 60.8
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 4.1e-09 63.9 50 56.0
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.1e-09 63.9 51 60.8
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 4.1e-09 63.9 51 60.8
BcaNung00182 Brassica carinata HOM05D003385 ORTHO05D003844 5.4e-09 63.5 51 56.9
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 5.4e-09 63.5 51 62.7
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 5.4e-09 63.5 51 56.9
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 7.0e-09 63.2 51 56.9
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 7.0e-09 63.2 51 56.9
Sc25g0000080 Simmondsia chinensis HOM05D003385 ORTHO05D003844 7.0e-09 63.2 51 56.9
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 9.1e-09 62.8 51 56.9
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 9.1e-09 62.8 49 61.2
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 9.1e-09 62.8 51 54.9
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 1.2e-08 62.4 51 58.8
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 1.2e-08 62.4 49 61.2
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 1.2e-08 62.4 49 59.2
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 1.2e-08 62.4 51 60.8
Prupe.5G072000 Prunus persica HOM05D003385 ORTHO05D003844 1.2e-08 62.4 51 58.8
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 1.2e-08 62.4 51 58.8
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 1.2e-08 62.4 51 58.8
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 1.6e-08 62.0 51 54.9
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 1.6e-08 62.0 51 58.8
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 1.6e-08 62.0 49 63.3
Medtr2g105240 Medicago truncatula HOM05D003385 ORTHO05D003844 2.0e-08 61.6 48 56.2
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 2.0e-08 61.6 51 60.8
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.7e-08 61.2 51 54.9
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 2.7e-08 61.2 51 54.9
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 3.5e-08 60.8 51 56.9
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 3.5e-08 60.8 49 55.1
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 3.5e-08 60.8 51 56.9
CARHR222940 Cardamine hirsuta HOM05D003385 ORTHO05D003844 4.5e-08 60.5 49 53.1
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 4.5e-08 60.5 49 59.2
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 4.5e-08 60.5 51 54.9
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 4.5e-08 60.5 51 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 5.9e-08 60.1 49 57.1
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 5.9e-08 60.1 50 56.0
Prupe.5G071800 Prunus persica HOM05D003385 ORTHO05D003844 5.9e-08 60.1 51 54.9
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 7.7e-08 59.7 51 54.9
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 7.7e-08 59.7 51 54.9
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 7.7e-08 59.7 51 54.9
BraA01t02007Z Brassica rapa HOM05D003385 ORTHO05D003844 7.7e-08 59.7 51 54.9
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 7.7e-08 59.7 50 54.0
Carub.0007s2496 Capsella rubella HOM05D003385 ORTHO05D003844 7.7e-08 59.7 49 55.1
Gohir.A11G079000 Gossypium hirsutum HOM05D003385 ORTHO05D003844 7.7e-08 59.7 49 55.1
Gorai.007G089200 Gossypium raimondii HOM05D003385 ORTHO05D003844 7.7e-08 59.7 49 55.1
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 7.7e-08 59.7 51 58.8
A01p20880 Brassica napus HOM05D003385 ORTHO05D003844 1.0e-07 59.3 51 52.9
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 1.0e-07 59.3 51 54.9
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 1.0e-07 59.3 51 54.9
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 1.0e-07 59.3 51 60.8
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.0e-07 59.3 49 57.1
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 1.3e-07 58.9 47 61.7
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.7e-07 58.5 45 57.8
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.7e-07 58.5 45 57.8
Cc02_g24330 Coffea canephora HOM05D003385 ORTHO05D003844 1.7e-07 58.5 49 53.1
Gohir.D11G083700 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.7e-07 58.5 49 53.1
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 1.7e-07 58.5 45 60.0
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 2.2e-07 58.2 49 57.1
DCAR_020191 Daucus carota HOM05D003385 ORTHO05D003844 2.2e-07 58.2 51 56.9
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 2.2e-07 58.2 49 55.1
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 2.2e-07 58.2 49 53.1
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 2.9e-07 57.8 51 52.9
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 2.9e-07 57.8 49 57.1
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.9e-07 57.8 51 52.9
HanXRQChr13g0396331 Helianthus annuus HOM05D003385 ORTHO05D003844 2.9e-07 57.8 51 54.9
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 5.0e-07 57.0 49 59.2
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 5.0e-07 57.0 49 59.2
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 1.1e-06 55.8 49 51.0
arahy.Tifrunner.gnm1.ann1.P9PDR5 Arachis hypogaea HOM05D001063 ORTHO05D000986 1.5e-06 55.5 40 65.0
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.5e-06 55.5 46 54.3
FAN25G0283 Fragaria x ananassa HOM05D003385 ORTHO05D003844 1.5e-06 55.5 49 57.1
CSS0014285 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.9e-06 55.1 48 54.2
AUR62007503 Chenopodium quinoa HOM05D001320 ORTHO05D002136 1.9e-06 55.1 40 67.5
Solyc08g078790.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 1.9e-06 55.1 51 51.0
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 2.5e-06 54.7 49 51.0
arahy.Tifrunner.gnm1.ann1.I3YFFK Arachis hypogaea HOM05D003385 ORTHO05D003844 3.2e-06 54.3 39 71.8
Lj2g0011318 Lotus japonicus HOM05D003385 ORTHO05D003844 3.2e-06 54.3 49 49.0
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 4.2e-06 53.9 49 46.9
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 4.2e-06 53.9 49 46.9
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 4.2e-06 53.9 49 46.9
GSVIVG01027642001 Vitis vinifera HOM05D003385 ORTHO05D003844 4.2e-06 53.9 51 51.0
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 7.2e-06 53.1 44 54.5
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 9.5e-06 52.8 51 47.1
Rhsim09G0191500 Rhododendron simsii HOM05D003385 ORTHO05D003844 9.5e-06 52.8 45 55.6


User provided reference genes

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