Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.7e-211 738.4 370 100.0
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 8.0e-192 673.7 378 90.7
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 2.1e-179 632.5 376 85.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 9.9e-174 613.6 381 83.5
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.5e-169 599.0 396 79.3
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 5.6e-169 597.8 377 80.1
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.4e-167 593.2 378 80.2
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 3.1e-167 592.0 352 85.5
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 6.9e-167 590.9 353 85.0
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 7.3e-161 570.9 350 78.3
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 3.6e-160 568.5 373 76.1
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 6.2e-160 567.8 348 80.2
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.4e-159 566.6 350 78.0
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.4e-159 566.6 355 78.9
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.4e-159 565.8 346 81.2
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 3.1e-159 565.5 369 77.0
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 5.3e-159 564.7 351 79.2
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 2.0e-158 562.8 346 81.5
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 4.5e-158 561.6 392 73.0
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 9.9e-158 560.5 325 83.1
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.9e-157 558.9 352 77.3
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.8e-157 558.5 385 74.5
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 4.9e-157 558.1 346 80.6
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.4e-157 557.8 318 83.3
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 6.4e-157 557.8 318 84.0
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 6.4e-157 557.8 367 74.9
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 6.4e-157 557.8 352 77.0
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.9e-156 556.2 318 84.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 2.4e-156 555.8 380 73.2
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 4.2e-156 555.1 382 73.3
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 5.4e-156 554.7 318 83.6
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 5.4e-156 554.7 320 82.8
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 5.4e-156 554.7 324 81.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 9.3e-156 553.9 356 75.0
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 3.5e-155 552.0 318 83.3
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 4.6e-155 551.6 325 80.3
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 6.0e-155 551.2 318 82.4
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 7.9e-155 550.8 319 83.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 7.9e-155 550.8 348 76.1
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 5.1e-154 548.1 383 71.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 8.7e-154 547.4 317 83.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.9e-153 546.2 353 75.4
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 4.3e-153 545.0 319 80.6
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 7.4e-153 544.3 383 70.8
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.1e-152 542.7 388 71.6
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.8e-152 542.3 350 76.0
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 6.2e-152 541.2 318 80.2
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.4e-151 540.0 352 74.4
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 3.1e-151 538.9 319 80.3
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 5.3e-151 538.1 359 72.7
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 9.0e-151 537.3 319 80.6
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.5e-150 536.6 318 79.9
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.6e-150 535.8 357 75.9
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 4.5e-150 535.0 348 74.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 4.5e-150 535.0 318 79.6
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 5.8e-150 534.6 318 82.1
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 5.8e-150 534.6 319 79.6
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 7.6e-150 534.3 319 79.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.0e-149 533.9 377 70.3
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 3.8e-149 531.9 316 79.7
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 3.8e-149 531.9 316 79.7
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 3.8e-149 531.9 316 79.7
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 8.4e-149 530.8 319 79.0
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.1e-148 530.4 298 84.6
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 4.2e-148 528.5 319 78.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 4.2e-148 528.5 319 78.1
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.6e-147 526.6 298 84.6
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 6.0e-147 524.6 352 73.0
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 6.0e-147 524.6 371 70.1
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 7.9e-147 524.2 385 67.3
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.0e-146 523.9 326 76.4
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.3e-146 523.5 351 71.8
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.8e-146 523.1 317 76.7
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.1e-146 521.5 348 72.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 6.7e-146 521.2 316 77.8
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.1e-145 520.4 370 70.3
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 2.5e-145 519.2 355 73.5
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.6e-144 516.5 316 79.1
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.4e-143 513.5 396 63.4
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 3.1e-143 512.3 354 70.9
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.2e-142 510.4 350 73.7
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.3e-138 496.9 325 73.5
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 3.9e-138 495.4 276 85.5
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.1e-135 487.3 310 76.8
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 8.5e-133 477.6 276 82.6
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 9.4e-132 474.2 371 66.0
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 7.4e-129 464.5 268 82.1
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 5.3e-127 458.4 377 66.0
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 5.0e-125 451.8 261 83.9
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.8e-122 443.4 302 74.5
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 2.3e-122 443.0 267 77.9
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 3.5e-118 429.1 347 59.4
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 1.2e-115 420.6 318 62.6
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 8.8e-114 414.5 268 72.4
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 2.6e-113 412.9 319 59.2
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.3e-112 410.6 268 79.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 7.0e-111 404.8 318 61.0
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 9.1e-111 404.4 272 76.5
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.0e-110 403.3 255 76.5
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 8.3e-104 381.3 285 69.5
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 7.2e-100 368.2 290 64.8
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.7e-94 349.7 226 75.2
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-87 327.0 267 70.4
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.1e-84 317.8 241 70.5
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 9.8e-81 304.7 267 63.7
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.3e-74 283.5 316 44.6
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.3e-74 283.5 316 44.6
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.5e-73 280.8 311 46.6
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.3e-69 267.7 340 42.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 6.6e-69 265.4 165 75.8
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.4e-64 248.8 154 76.6
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 6.0e-62 242.3 130 91.5
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.9e-60 237.3 166 71.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 6.9e-42 175.6 91 94.5
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 2.1e-35 154.1 393 32.1
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-33 148.3 100 69.0
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.0e-30 136.0 90 72.2
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.7e-28 129.4 75 77.3
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.5e-25 121.3 79 70.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 1.0e-24 118.6 105 61.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 2.1e-22 110.9 79 64.6
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 9.0e-18 95.5 126 54.0
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.4e-17 93.6 54 83.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.3e-16 91.7 58 72.4
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 2.2e-16 90.9 74 64.9
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 4.2e-15 86.7 100 53.0
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 7.9e-14 82.4 57 63.2
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 7.9e-14 82.4 57 63.2
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 6.7e-13 79.3 158 34.2
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.5e-12 78.2 95 49.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 2.0e-12 77.8 296 28.0
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 4.8e-11 73.2 40 82.5
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 6.3e-11 72.8 41 85.4
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 8.2e-11 72.4 46 73.9
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 8.2e-11 72.4 297 26.9
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.4e-10 71.6 87 48.3
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 5.3e-10 69.7 308 26.0
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 6.9e-10 69.3 319 23.8
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 9.1e-10 68.9 331 24.8
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 9.1e-10 68.9 308 26.6
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.5e-09 68.2 314 24.2
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.5e-09 68.2 289 26.0
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 3.4e-09 67.0 299 27.8
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 3.4e-09 67.0 282 25.5
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 4.5e-09 66.6 42 76.2
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.3e-08 65.1 350 23.7
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.7e-08 64.7 291 26.1
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 2.2e-08 64.3 283 26.5
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 2.2e-08 64.3 295 24.7
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 8.5e-08 62.4 285 25.6
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 8.5e-08 62.4 285 24.9
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 8.5e-08 62.4 285 24.9
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 1.9e-07 61.2 285 24.2
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.9e-07 61.2 290 24.8
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 3.2e-07 60.5 33 81.8
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 4.2e-07 60.1 75 42.7
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 5.5e-07 59.7 281 24.2
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 7.2e-07 59.3 280 23.9
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 1.2e-06 58.5 289 24.2
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 1.6e-06 58.2 296 25.7
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 2.7e-06 57.4 281 23.8
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 6.1e-06 56.2 281 23.5
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 6.1e-06 56.2 277 24.2


User provided reference genes

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