Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.3e-132 476.5 255 100.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 3.9e-129 464.9 255 97.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.5e-125 453.0 259 95.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.2e-124 449.1 259 93.8
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 5.0e-116 421.4 260 88.5
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.2e-114 416.8 263 87.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.6e-114 415.2 263 87.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.9e-114 414.1 263 87.1
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.9e-113 411.8 263 86.7
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.5e-112 409.8 260 85.8
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.1e-110 402.1 246 89.0
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.3e-108 396.7 263 82.5
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.7e-108 396.4 263 83.3
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 6.5e-108 394.4 263 83.3
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.5e-108 394.4 263 82.9
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.5e-108 394.4 263 82.9
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.5e-108 394.4 263 82.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.4e-107 393.3 263 82.1
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.5e-107 392.5 263 82.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 9.4e-107 390.6 245 87.8
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 9.4e-107 390.6 263 80.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.4e-107 390.6 263 81.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.4e-107 390.6 263 81.7
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.6e-106 389.8 262 80.9
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.6e-106 389.8 263 81.4
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.1e-106 389.4 263 81.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.7e-106 389.0 263 81.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.7e-106 389.0 263 81.4
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 3.6e-106 388.7 263 81.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.6e-106 388.7 263 81.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 6.1e-106 387.9 263 80.6
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.1e-106 387.9 263 81.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.9e-106 387.5 263 82.1
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 7.9e-106 387.5 263 81.4
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.0e-105 387.1 261 79.3
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.8e-105 386.3 263 80.6
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.3e-105 386.0 263 80.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.3e-105 386.0 263 81.7
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.3e-105 386.0 263 79.8
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 3.0e-105 385.6 263 81.7
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.1e-105 384.8 263 80.2
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 5.1e-105 384.8 263 81.0
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.1e-104 383.6 263 80.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.1e-104 383.6 263 80.6
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.1e-104 383.6 263 80.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.1e-104 383.6 263 80.2
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 80.2
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 77.6
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 79.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 79.5
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.6e-104 382.5 263 79.1
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 2.6e-104 382.5 262 80.2
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.3e-104 382.1 263 81.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 4.4e-104 381.7 263 78.7
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 4.4e-104 381.7 263 78.3
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 5.7e-104 381.3 263 79.1
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 5.7e-104 381.3 263 78.7
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 7.4e-104 380.9 263 79.1
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 9.7e-104 380.6 263 78.7
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.3e-103 380.2 262 78.6
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-103 380.2 263 77.9
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.7e-103 379.8 259 79.2
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 77.9
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 78.3
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.7e-103 378.6 262 79.4
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.8e-103 378.3 263 77.6
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.8e-103 378.3 263 80.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.3e-103 377.9 262 77.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 6.3e-103 377.9 263 78.7
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.3e-103 377.9 262 78.6
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 6.3e-103 377.9 263 80.2
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.3e-103 377.9 263 78.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 8.2e-103 377.5 263 77.9
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.2e-103 377.5 263 77.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.1e-102 377.1 263 77.9
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.1e-102 377.1 260 78.5
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.4e-102 376.7 264 77.3
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 2.4e-102 375.9 262 77.9
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.4e-102 375.9 263 78.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.4e-102 375.9 264 79.5
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 3.1e-102 375.6 263 78.3
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 4.1e-102 375.2 262 78.6
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 5.3e-102 374.8 263 77.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 5.3e-102 374.8 263 78.7
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 5.3e-102 374.8 262 78.6
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 7.0e-102 374.4 263 78.7
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.2e-101 373.6 263 78.7
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-101 373.6 263 76.8
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-101 373.2 261 77.0
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-101 373.2 261 77.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.0e-101 372.9 263 77.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.0e-101 372.9 263 77.9
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.0e-101 372.9 263 78.7
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 5.9e-101 371.3 263 77.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 7.7e-101 370.9 263 77.6
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.0e-100 370.5 263 77.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.7e-100 369.8 262 76.7
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.7e-100 369.8 263 76.8
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.9e-100 369.0 255 78.8
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.9e-100 369.0 263 77.2
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.8e-100 368.6 252 79.4
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.5e-99 366.7 264 76.9
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.9e-99 366.3 239 85.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.5e-99 365.9 256 77.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.6e-98 363.2 246 80.1
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 2.1e-98 362.8 264 74.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 2.7e-98 362.5 255 77.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.6e-98 362.1 246 79.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 8.0e-98 360.9 259 76.4
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.3e-97 359.4 224 85.3
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 5.2e-97 358.2 263 74.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.2e-97 358.2 263 74.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 6.7e-97 357.8 263 74.5
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 6.7e-97 357.8 263 74.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 8.8e-97 357.5 263 74.5
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-96 356.7 263 74.1
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.9
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.9
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.9
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 2.0e-96 356.3 263 74.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.6e-96 355.9 270 73.7
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-96 355.5 263 74.1
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 3.3e-96 355.5 263 74.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-96 355.1 264 73.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 4.4e-96 355.1 264 73.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 4.4e-96 355.1 264 73.9
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.4e-96 354.4 263 74.1
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 7.4e-96 354.4 263 74.1
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.3e-95 353.6 263 74.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.8e-94 349.7 270 71.9
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.7e-92 343.2 210 85.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 5.0e-92 341.7 221 78.7
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 8.5e-92 340.9 255 69.8
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.0e-89 334.0 221 76.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-89 333.6 225 78.2
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.8e-89 331.3 255 69.0
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.7e-87 326.6 215 82.3
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.2e-87 326.2 249 71.1
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 5.9e-85 318.2 218 74.3
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 6.5e-84 314.7 263 69.6
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.2e-83 312.0 263 68.1
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 6.1e-82 308.1 201 85.6
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.2e-79 299.7 247 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.4e-78 297.0 231 68.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 9.5e-75 284.3 267 60.3
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.8e-73 280.0 263 64.3
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.6e-69 266.9 208 66.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.3e-67 258.8 220 64.1
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 7.3e-67 258.1 251 61.4
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.1e-66 256.5 251 61.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.3e-65 253.1 264 58.0
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.5e-64 250.4 211 63.5
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.8e-64 248.4 248 61.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.5e-61 239.2 262 59.2
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 7.5e-56 221.5 237 51.9
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.9e-52 209.1 239 50.2
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.3e-51 206.1 131 80.9
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.8e-49 198.4 237 55.3
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.8e-48 195.3 118 84.7
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-43 181.0 138 72.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.6e-42 177.2 180 58.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 8.1e-34 148.3 118 73.7
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.7e-31 140.6 128 63.3
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.8e-25 120.6 189 43.4
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.1e-25 119.8 69 89.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.2e-22 109.4 96 64.6


User provided reference genes

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