Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.8e-203 711.8 390 100.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 7.3e-143 511.1 391 72.4
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 4.9e-115 418.7 407 62.2
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 4.6e-97 359.0 411 52.6
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 3.5e-89 332.8 443 47.6
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.8e-88 330.5 437 49.7
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 2.8e-86 323.2 447 46.1
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.8e-85 320.5 430 45.8
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.1e-85 319.3 389 51.7
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.3e-85 318.9 418 47.1
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.0e-84 317.0 405 49.1
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.7e-84 315.1 390 47.7
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 7.7e-84 315.1 395 47.6
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 5.0e-83 312.4 396 46.2
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 5.0e-83 312.4 414 50.7
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 6.5e-83 312.0 442 45.2
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.4e-82 310.8 397 45.3
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 3.2e-82 309.7 447 45.2
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.2e-82 309.7 446 48.7
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 7.2e-82 308.5 413 46.5
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.6e-81 306.2 386 49.0
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 4.6e-81 305.8 384 49.0
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 7.9e-81 305.1 437 51.0
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.4e-80 304.3 417 45.8
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 3.9e-80 302.8 419 45.6
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 3.9e-80 302.8 419 45.6
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.9e-80 302.8 369 48.5
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 6.7e-80 302.0 367 48.8
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 8.8e-80 301.6 406 46.3
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.1e-79 301.2 405 46.9
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 2.5e-79 300.1 453 46.4
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 3.3e-79 299.7 377 48.5
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 3.3e-79 299.7 361 48.8
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 4.3e-79 299.3 404 46.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 5.7e-79 298.9 409 45.0
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 7.4e-79 298.5 407 46.2
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.3e-78 297.7 470 44.0
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 6.3e-78 295.4 367 48.0
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-77 294.3 376 47.9
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.4e-77 293.5 443 44.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.1e-77 293.1 395 45.8
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 4.1e-77 292.7 404 47.8
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 6.9e-77 292.0 471 43.7
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 9.1e-77 291.6 377 47.5
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.5e-76 290.8 382 46.9
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.5e-76 290.8 377 47.2
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 2.0e-76 290.4 333 52.3
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 7.7e-76 288.5 425 43.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.7e-75 287.3 398 44.0
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.7e-75 287.3 372 46.8
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 5.0e-75 285.8 405 44.9
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 5.0e-75 285.8 384 45.8
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 8.5e-75 285.0 388 47.4
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.1e-74 284.6 341 48.1
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.1e-74 284.6 436 45.0
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 9.4e-74 281.6 436 44.7
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 4.7e-73 279.3 392 46.2
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 4.7e-73 279.3 279 55.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.1e-73 278.9 414 44.2
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 6.1e-73 278.9 392 45.4
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-72 277.7 356 48.3
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 3.9e-72 276.2 418 43.3
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.9e-72 276.2 408 44.6
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 5.1e-72 275.8 365 46.0
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 8.8e-72 275.0 437 41.4
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.4e-71 272.7 418 42.6
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 7.4e-71 271.9 359 48.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 7.4e-71 271.9 272 54.4
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.3e-70 271.2 403 44.4
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.2e-70 270.4 405 44.4
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.7e-70 269.6 418 44.3
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 3.7e-70 269.6 385 44.9
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 4.8e-70 269.2 418 44.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 6.3e-70 268.9 327 49.2
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.3e-70 268.9 391 44.8
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.4e-69 266.9 328 46.6
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 3.1e-69 266.5 385 44.7
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 4.1e-69 266.2 477 38.6
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.2e-68 264.6 365 45.5
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.2e-68 264.6 456 40.4
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.0e-68 263.8 449 42.8
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.6e-68 263.5 383 43.9
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 4.5e-68 262.7 236 57.6
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 5.9e-68 262.3 383 43.6
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 5.9e-68 262.3 420 46.0
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 5.9e-68 262.3 431 44.3
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.9e-68 262.3 430 44.9
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 7.7e-68 261.9 407 44.0
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.0e-67 261.5 407 43.7
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.7e-67 260.8 431 45.2
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.2e-67 260.4 438 44.5
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.8e-67 259.6 361 45.2
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.8e-67 259.6 438 45.2
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 5.0e-67 259.2 335 47.8
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 4.2e-66 256.1 319 47.6
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 9.4e-66 255.0 405 42.7
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.6e-65 254.2 348 45.7
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.8e-64 250.8 416 42.3
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.3e-64 250.4 443 38.4
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 8.8e-64 248.4 616 34.9
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 8.8e-64 248.4 337 46.3
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 2.0e-63 247.3 390 42.1
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 2.0e-63 247.3 370 44.3
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.3e-63 246.5 402 44.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.7e-63 245.7 415 43.1
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 3.7e-62 243.0 409 40.8
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 8.2e-62 241.9 436 42.7
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 3.1e-61 240.0 360 45.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.1e-61 239.6 352 45.2
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 7.0e-61 238.8 413 38.3
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 7.0e-61 238.8 420 40.5
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 2.0e-60 237.3 278 51.4
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 2.7e-60 236.9 395 42.0
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.2e-57 228.0 418 38.5
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.2e-57 228.0 344 47.1
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.7e-57 226.9 372 41.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.6e-57 226.5 425 44.0
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.2e-55 221.5 362 42.5
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.4e-55 219.5 132 79.5
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 9.8e-55 218.4 205 54.1
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.4e-53 213.8 314 42.7
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.4e-53 212.6 371 42.3
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.0e-51 208.4 367 40.9
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.5e-50 204.5 113 86.7
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 7.2e-50 202.2 378 38.1
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.7e-49 200.3 108 87.0
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.7e-49 200.3 108 87.0
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 4.7e-49 199.5 249 50.6
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 8.8e-48 195.3 308 43.2
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 9.2e-45 185.3 102 86.3
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.2e-44 184.9 132 71.2
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.2e-44 184.9 132 71.2
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.0e-43 181.8 294 39.8
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 4.3e-42 176.4 400 35.8
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.4e-39 166.4 113 76.1
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.9e-38 162.9 94 80.9
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.2e-33 148.3 137 57.7
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.8e-33 147.1 320 32.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 3.6e-33 146.7 184 42.9
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 9.8e-31 138.7 75 86.7
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.2e-29 133.7 157 48.4
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 2.7e-28 130.6 307 33.9
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 2.3e-24 117.5 65 81.5
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 3.5e-20 103.6 60 81.7
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 6.6e-19 99.4 106 50.9
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.1e-18 98.6 302 34.8
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 2.5e-18 97.4 105 48.6
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 7.3e-18 95.9 81 58.0
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 6.8e-16 89.4 67 67.2
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 8.9e-16 89.0 62 66.1
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.6e-15 87.4 267 30.3
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.4e-15 87.0 92 50.0
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.0e-12 76.3 38 84.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.3e-11 75.1 41 78.0
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 4.3e-10 70.1 107 37.4
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 7.3e-10 69.3 294 26.9
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 4.7e-09 66.6 50 60.0
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.1e-08 65.5 104 35.6
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 4.0e-08 63.5 77 44.2
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.5e-07 61.6 67 50.7
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.4e-07 60.1 281 26.7
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.8e-07 59.7 77 42.9
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 7.6e-07 59.3 83 41.0
Glyma.08G216100 Glycine max HOM05D003936 ORTHO05D004747 6.4e-06 56.2 227 33.0


User provided reference genes

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