Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.6e-149 531.6 267 100.0
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 7.5e-131 470.7 265 90.9
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 3.0e-116 422.2 262 82.4
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 9.8e-115 417.2 270 80.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 8.0e-109 397.5 279 73.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 6.8e-108 394.4 274 76.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.5e-107 393.3 259 78.0
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 3.7e-106 388.7 255 78.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.9e-105 386.3 252 77.8
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 4.6e-104 381.7 267 74.2
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.0e-103 380.6 254 76.4
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-103 380.2 254 76.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-103 379.8 254 76.0
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.5e-102 376.7 266 75.2
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.6e-101 373.2 220 82.3
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 3.6e-101 372.1 266 74.4
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.7e-101 371.7 227 81.5
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 4.7e-101 371.7 251 78.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.7e-101 371.7 233 80.7
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.1e-100 369.0 217 84.3
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 4.0e-100 368.6 275 70.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.0e-99 366.3 278 69.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.4e-99 365.5 218 82.1
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.4e-99 365.2 241 75.5
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 4.4e-99 365.2 234 76.9
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.4e-99 365.2 244 77.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.3e-98 363.6 217 82.5
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.3e-98 363.6 216 81.0
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 3.7e-98 362.1 285 68.1
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.3e-98 360.9 219 81.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.1e-97 360.5 216 81.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.4e-97 360.1 265 71.3
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.4e-97 359.4 214 81.8
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 3.2e-97 359.0 279 68.1
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 9.2e-97 357.5 228 78.9
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 9.2e-97 357.5 266 70.7
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.2e-96 357.1 212 82.5
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.5e-96 355.5 223 78.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.7e-95 353.2 216 79.2
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.0e-95 352.4 267 67.8
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.1e-95 351.7 246 71.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.5e-94 350.1 249 71.5
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.9e-94 349.7 259 66.8
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.9e-94 349.7 266 69.9
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 5.6e-94 348.2 245 72.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.2e-93 347.1 218 78.9
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.6e-93 346.7 222 76.1
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.6e-93 346.7 216 76.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.8e-93 345.9 267 66.3
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.6e-93 345.5 216 77.3
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 4.7e-93 345.1 228 74.1
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 8.1e-93 344.4 259 67.2
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 8.1e-93 344.4 259 67.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.1e-92 344.0 216 76.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-92 343.6 214 77.6
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-92 343.2 261 66.7
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.8e-92 343.2 259 67.2
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-92 343.2 261 66.7
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-92 342.8 214 77.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.3e-92 342.8 214 77.6
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 5.2e-92 341.7 214 77.1
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 5.2e-92 341.7 214 77.1
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 8.9e-92 340.9 216 78.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.2e-91 340.5 260 68.5
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.0e-91 339.7 256 69.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.6e-91 339.3 220 75.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.6e-91 339.3 214 76.6
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.4e-91 339.0 241 71.4
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.3e-90 337.0 258 68.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.2e-90 336.3 226 71.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.2e-90 336.3 247 70.0
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.9e-90 335.9 231 71.9
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 2.9e-90 335.9 229 74.2
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.7e-90 335.5 258 67.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 4.9e-90 335.1 225 72.0
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.9e-89 333.2 227 72.2
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.1e-89 332.0 216 74.1
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.1e-89 331.3 227 70.9
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 7.1e-89 331.3 213 76.5
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 9.2e-89 330.9 214 75.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 9.2e-89 330.9 214 75.2
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 9.2e-89 330.9 214 77.1
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-88 329.7 217 74.7
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 4.6e-88 328.6 214 75.2
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 6.0e-88 328.2 242 68.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 6.0e-88 328.2 260 64.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-87 327.4 219 74.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-87 327.4 219 74.9
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.3e-87 327.0 222 70.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.7e-87 326.6 269 64.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.9e-87 325.5 217 74.2
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 6.6e-87 324.7 213 73.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 8.6e-87 324.3 213 73.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.5e-86 322.8 253 66.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.3e-86 322.0 213 73.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 7.3e-86 321.2 224 71.4
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 9.6e-86 320.9 219 71.7
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 9.6e-86 320.9 211 75.4
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.2e-85 320.5 217 73.3
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.1e-85 319.7 210 74.3
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.1e-85 319.7 215 73.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 4.7e-85 318.5 217 72.8
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.7e-85 318.5 209 74.6
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.7e-85 318.5 220 71.8
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.7e-85 318.5 224 70.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.1e-84 317.4 248 67.3
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.4e-84 317.0 265 62.3
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.1e-84 315.8 215 73.5
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.1e-84 315.8 215 73.5
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.0e-84 315.5 219 71.7
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.0e-84 315.5 219 71.7
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 6.8e-84 314.7 215 73.0
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 8.9e-84 314.3 215 72.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.5e-83 313.5 213 73.2
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.0e-83 313.2 210 72.4
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.6e-83 312.8 216 72.2
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.4e-83 312.4 250 64.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 4.4e-83 312.0 210 75.7
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 5.8e-83 311.6 214 72.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 7.6e-83 311.2 222 70.3
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.3e-82 310.5 253 63.6
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.9e-82 309.3 245 66.5
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 4.9e-82 308.5 236 66.5
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.4e-82 307.8 212 70.3
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 8.4e-82 307.8 248 64.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.1e-81 307.4 216 71.8
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.2e-81 305.8 216 69.9
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.2e-80 303.9 180 81.7
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 2.1e-80 303.1 207 73.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.7e-80 302.8 216 69.4
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.5e-78 296.2 219 66.7
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 3.3e-78 295.8 219 66.7
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 3.3e-78 295.8 219 66.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 7.3e-78 294.7 219 66.2
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 7.3e-78 294.7 219 66.2
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 7.3e-78 294.7 219 66.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.1e-77 293.1 219 66.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.1e-76 289.3 227 67.0
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 3.1e-76 289.3 201 72.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 8.4e-74 281.2 179 77.7
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 6.6e-71 271.6 179 73.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.3e-68 261.9 307 51.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.4e-67 259.2 206 65.5
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.5e-67 258.8 257 55.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 9.3e-65 251.1 223 60.1
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.3e-63 246.5 219 59.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.3e-61 240.7 226 55.3
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.6e-61 240.4 142 85.2
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.8e-61 238.8 142 84.5
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 6.9e-60 235.0 201 60.7
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.5e-59 232.3 135 84.4
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 8.7e-55 218.0 221 53.4
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 7.6e-51 204.9 226 50.0
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.6e-48 197.2 261 43.3
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.8e-42 176.0 168 51.8
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.9e-41 173.7 179 55.3
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.6e-40 169.5 174 51.7
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.7e-29 134.0 93 68.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-26 124.4 80 75.0
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.3e-15 87.0 63 63.5
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.6e-14 83.6 89 48.3
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 4.1e-12 76.3 99 44.4
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 5.9e-11 72.4 68 51.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.6e-08 64.3 81 46.9
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.7e-08 63.5 72 48.6
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 8.0e-08 62.0 44 68.2
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 6.8e-07 58.9 34 79.4


User provided reference genes

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