Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 2.3e-64 248.8 133 100.0
VMungo0331G0585 Vigna mungo HOM05D002758 ORTHO05D002885 3.0e-48 195.3 133 84.2
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 8.5e-43 177.2 139 72.7
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 7.2e-42 174.1 139 72.7
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 2.1e-33 146.0 136 60.3
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 2.8e-30 135.6 137 59.9
Psat7g255440 Pisum sativum HOM05D002758 ORTHO05D002885 2.0e-23 112.8 137 54.0
Lalb_Chr01g0012401 Lupinus albus HOM05D002758 ORTHO05D002885 2.6e-23 112.5 132 57.6
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 2.6e-23 112.5 133 55.6
TPR.G37180 Trifolium pratense HOM05D002758 ORTHO05D002885 2.8e-22 109.0 142 51.4
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 3.7e-22 108.6 139 50.4
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 3.1e-21 105.5 133 55.6
Lj3g0008770 Lotus japonicus HOM05D002758 ORTHO05D002885 4.1e-21 105.1 146 50.0
arahy.Tifrunner.gnm1.ann1.66WDLV Arachis hypogaea HOM05D002758 ORTHO05D002885 4.5e-20 101.7 141 51.1
Lalb_Chr10g0096781 Lupinus albus HOM05D002758 ORTHO05D002885 1.0e-19 100.5 124 51.6
arahy.Tifrunner.gnm1.ann1.R8JN66 Arachis hypogaea HOM05D002758 ORTHO05D002885 2.3e-19 99.4 144 47.2
Lalb_Chr25g0279401 Lupinus albus HOM05D002758 ORTHO05D002885 3.8e-19 98.6 138 53.6
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 3.8e-19 98.6 133 51.9
Medtr2g103750 Medicago truncatula HOM05D002758 ORTHO05D002885 8.6e-19 97.4 135 50.4
arahy.Tifrunner.gnm1.ann1.FSE12S Arachis hypogaea HOM05D002758 ORTHO05D002885 3.3e-18 95.5 138 47.8
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 1.4e-16 90.1 139 49.6
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 1.4e-16 90.1 139 49.6
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 2.3e-16 89.4 139 48.9
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 5.2e-16 88.2 138 45.7
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 5.2e-16 88.2 140 45.0
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 8.9e-16 87.4 139 49.6
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 1.2e-15 87.0 134 50.0
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.5e-15 86.7 129 48.1
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 2.0e-15 86.3 130 46.9
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.6e-15 85.9 132 47.0
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 5.7e-15 84.7 131 43.5
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.5e-15 84.3 132 46.2
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 9.8e-15 84.0 132 46.2
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.8e-14 82.4 134 47.0
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 6.3e-14 81.3 135 46.7
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 8.3e-14 80.9 139 46.0
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 8.3e-14 80.9 132 45.5
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 1.1e-13 80.5 140 45.0
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 1.4e-13 80.1 133 47.4
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.4e-13 80.1 128 46.9
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.2e-13 79.0 136 41.2
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 4.1e-13 78.6 135 43.7
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 4.1e-13 78.6 133 46.6
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 5.4e-13 78.2 128 43.8
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 5.4e-13 78.2 131 45.0
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 7.0e-13 77.8 135 43.7
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.2e-13 77.4 136 44.9
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 1.2e-12 77.0 130 45.4
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.6e-12 76.6 124 45.2
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 1.6e-12 76.6 133 44.4
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 2.0e-12 76.3 133 41.4
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 2.7e-12 75.9 131 41.2
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 2.7e-12 75.9 138 43.5
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.5e-12 75.1 133 45.9
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 4.5e-12 75.1 129 43.4
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 4.5e-12 75.1 139 44.6
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 5.9e-12 74.7 140 45.7
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 7.8e-12 74.3 136 45.6
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 7.8e-12 74.3 125 43.2
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.0e-11 73.9 135 42.2
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 2.3e-11 72.8 136 42.6
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 2.3e-11 72.8 138 47.8
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.9e-11 72.4 139 45.3
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 5.0e-11 71.6 132 41.7
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 6.6e-11 71.2 126 45.2
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 6.6e-11 71.2 142 45.1
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 1.5e-10 70.1 142 41.5
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 3.3e-10 68.9 143 44.1
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 4.3e-10 68.6 146 41.8
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 5.6e-10 68.2 131 39.7
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 7.3e-10 67.8 142 41.5
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 7.3e-10 67.8 137 39.4
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 7.3e-10 67.8 118 45.8
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 9.5e-10 67.4 138 41.3
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.2e-09 67.0 120 43.3
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.2e-09 67.0 120 43.3
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.2e-09 67.0 144 39.6
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 1.2e-09 67.0 137 41.6
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.6e-09 66.6 144 42.4
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 1.6e-09 66.6 136 45.6
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 1.6e-09 66.6 134 41.8
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 1.6e-09 66.6 132 41.7
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.1e-09 66.2 138 39.1
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.1e-09 66.2 136 47.1
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 2.1e-09 66.2 131 47.3
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 2.8e-09 65.9 136 41.2
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.6e-09 65.5 120 42.5
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 4.7e-09 65.1 142 40.1
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 4.7e-09 65.1 130 44.6
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 6.1e-09 64.7 134 38.1
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 8.0e-09 64.3 136 43.4
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 8.0e-09 64.3 136 43.4
PSO210G1692 Papaver somniferum HOM05D002758 ORTHO05D002885 8.0e-09 64.3 138 41.3
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 1.0e-08 63.9 133 39.8
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.0e-08 63.9 136 47.1
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 1.4e-08 63.5 133 41.4
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.8e-08 63.2 138 44.2
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 2.3e-08 62.8 134 38.8
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 2.3e-08 62.8 133 40.6
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 3.1e-08 62.4 133 38.3
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.1e-08 62.4 141 37.6
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 3.1e-08 62.4 124 46.0
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 5.2e-08 61.6 137 43.8
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 5.2e-08 61.6 134 38.8
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 5.2e-08 61.6 138 36.2
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 5.2e-08 61.6 141 41.8
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 6.8e-08 61.2 128 45.3
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 6.8e-08 61.2 138 40.6
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 6.8e-08 61.2 148 39.2
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 6.8e-08 61.2 144 43.8
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 1.2e-07 60.5 142 40.1
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.2e-07 60.5 142 43.0
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.2e-07 60.5 137 43.8
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.2e-07 60.5 137 43.8
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.2e-07 60.5 137 43.8
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 1.5e-07 60.1 145 35.9
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 1.5e-07 60.1 145 35.9
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 1.5e-07 60.1 145 35.9
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 1.5e-07 60.1 126 38.9
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 1.5e-07 60.1 133 39.8
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.0e-07 59.7 135 43.0
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.0e-07 59.7 132 43.9
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.0e-07 59.7 136 41.9
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.0e-07 59.7 136 41.2
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 2.6e-07 59.3 130 40.8
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 2.6e-07 59.3 134 41.0
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 3.4e-07 58.9 139 41.0
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 3.4e-07 58.9 140 38.6
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 4.4e-07 58.5 141 42.6
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.4e-07 58.5 137 39.4
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 5.8e-07 58.2 148 39.9
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 5.8e-07 58.2 142 39.4
FAN09G3789 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.5e-07 57.8 115 41.7
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 7.5e-07 57.8 142 42.3
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 1.3e-06 57.0 134 39.6
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 1.3e-06 57.0 120 41.7
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.3e-06 57.0 129 41.1
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 1.7e-06 56.6 144 40.3
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 1.7e-06 56.6 127 41.7
PSO210G5441 Papaver somniferum HOM05D002758 ORTHO05D002885 1.7e-06 56.6 128 40.6
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 1.7e-06 56.6 144 40.3
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 1.7e-06 56.6 160 41.9
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 2.2e-06 56.2 148 36.5
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 2.2e-06 56.2 134 44.0
MBI04_g24597_MAGBIO Magnolia biondii HOM05D002758 ORTHO05D002885 2.2e-06 56.2 131 43.5
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 2.2e-06 56.2 141 39.0
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 2.2e-06 56.2 140 41.4
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.2e-06 56.2 143 42.7
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 2.9e-06 55.8 142 38.0
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 2.9e-06 55.8 135 36.3
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.9e-06 55.8 142 41.5
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 2.9e-06 55.8 135 42.2
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-06 55.5 142 38.0
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-06 55.5 142 38.0
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 4.9e-06 55.1 134 39.6
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 4.9e-06 55.1 135 41.5
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 6.4e-06 54.7 142 38.0
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 6.4e-06 54.7 141 41.1
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 8.3e-06 54.3 128 42.2
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 8.3e-06 54.3 136 44.9


User provided reference genes

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