Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 1.0e-223 779.6 370 100.0
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 1.5e-177 626.3 372 81.7
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 1.6e-163 579.7 373 75.1
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 2.1e-160 569.3 373 75.3
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 6.1e-139 498.0 373 64.3
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 6.5e-133 478.0 382 59.9
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 1.5e-129 466.8 382 61.3
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 7.4e-129 464.5 380 60.0
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 3.7e-128 462.2 382 60.5
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 1.5e-126 456.8 385 58.2
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 3.6e-123 445.7 373 58.4
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 6.7e-122 441.4 383 57.7
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.5e-121 440.3 368 58.4
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 1.8e-119 433.3 361 57.6
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 7.7e-118 427.9 372 55.4
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 4.2e-116 422.2 371 54.4
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 9.4e-116 421.0 372 55.6
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 1.2e-115 420.6 371 56.6
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 3.6e-115 419.1 373 55.5
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 3.0e-114 416.0 376 55.6
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 3.9e-114 415.6 372 54.3
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 5.7e-113 411.8 375 54.7
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 2.8e-112 409.5 380 54.5
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 3.7e-112 409.1 381 54.6
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 1.4e-111 407.1 374 53.2
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 2.4e-111 406.4 377 54.4
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 4.1e-111 405.6 375 54.4
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 7.0e-111 404.8 372 54.0
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.2e-110 404.1 371 55.5
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.2e-110 404.1 372 55.1
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 2.6e-110 402.9 375 54.4
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 3.5e-110 402.5 337 59.1
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 4.5e-110 402.1 372 55.1
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 4.5e-110 402.1 372 54.8
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 4.5e-110 402.1 372 54.8
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 2.2e-109 399.8 381 53.5
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 2.1e-107 393.3 374 54.5
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 2.7e-107 392.9 378 51.9
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 3.6e-107 392.5 381 52.8
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 6.1e-107 391.7 374 54.3
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.0e-106 391.0 377 53.6
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.8e-106 390.2 368 52.4
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 3.0e-106 389.4 379 52.0
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 8.8e-106 387.9 383 52.2
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 8.8e-106 387.9 383 52.2
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.5e-105 387.1 373 52.3
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 7.5e-105 384.8 373 52.0
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.7e-104 382.5 369 53.7
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 4.8e-104 382.1 375 52.8
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 2.4e-103 379.8 385 50.6
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 3.1e-103 379.4 377 52.5
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.1e-103 379.4 371 53.1
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 5.9e-102 375.2 371 51.5
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 1.0e-101 374.4 369 50.4
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 3.8e-101 372.5 368 50.0
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 5.0e-101 372.1 376 51.9
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 2.7e-99 366.3 368 50.5
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 8.0e-99 364.8 376 50.8
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 8.8e-98 361.3 376 49.5
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 3.4e-97 359.4 317 55.8
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 4.4e-97 359.0 365 49.6
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 4.1e-95 352.4 301 57.5
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 5.0e-93 345.5 378 47.1
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 5.6e-92 342.0 381 46.5
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 3.4e-89 332.8 373 45.8
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 5.7e-89 332.0 368 48.1
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 4.9e-88 328.9 371 46.1
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 3.5e-86 322.8 373 46.4
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 3.6e-83 312.8 372 43.3
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 1.5e-81 307.4 368 46.5
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 1.9e-79 300.4 282 51.8
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 2.0e-73 280.4 245 55.9
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 5.8e-73 278.9 326 46.0
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 6.6e-69 265.4 192 63.0
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 5.6e-68 262.3 255 51.8
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 6.2e-51 205.7 383 32.6
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.1e-50 203.4 205 47.3
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 2.0e-49 200.7 376 32.7
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 3.2e-47 193.4 371 33.2
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 3.2e-39 166.8 151 49.7
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.6e-38 164.5 377 31.6
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.1e-35 154.1 377 29.2
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.5e-28 131.3 331 29.9
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 1.0e-24 118.6 216 35.2
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 1.6e-22 111.3 329 28.0
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 5.7e-20 102.8 379 24.8
AagrBONN_evm.TU.Sc2ySwM_117.2091 Anthoceros agrestis HOM05D003005 ORTHO05D004939 2.8e-19 100.5 371 24.8
Zm00001eb143020 Zea mays HOM05D002809 ORTHO05D004563 2.8e-19 100.5 325 25.2
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 8.2e-19 99.0 318 26.4
Os01g0923900 Oryza sativa ssp. japonica HOM05D002809 ORTHO05D004563 1.4e-18 98.2 325 25.2
Actinidia09645 Actinidia chinensis HOM05D002809 ORTHO05D004563 2.4e-18 97.4 326 27.6
ATR1156G059 Amborella trichopoda HOM05D007753 ORTHO05D009385 3.1e-18 97.1 140 42.1
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 5.3e-18 96.3 380 26.1
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 9.0e-18 95.5 100 51.0
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.6e-17 94.0 139 45.3
DCAR_026456 Daucus carota HOM05D002809 ORTHO05D004563 1.3e-16 91.7 348 25.3
Eucgr.E04314 Eucalyptus grandis HOM05D005977 ORTHO05D007546 1.7e-16 91.3 380 25.8
CAN.G809.67 Capsicum annuum HOM05D005977 ORTHO05D007546 2.2e-16 90.9 365 25.2
Manes.13G079162 Manihot esculenta HOM05D005977 ORTHO05D007546 3.8e-16 90.1 371 23.7
RcHm_v2.0_Chr5g0021071 Rosa chinensis HOM05D005977 ORTHO05D007546 5.0e-16 89.7 373 26.5
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 6.5e-16 89.4 355 25.1
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 1.1e-15 88.6 285 26.3
Sc14g0009090 Simmondsia chinensis HOM05D002809 ORTHO05D004563 1.1e-15 88.6 331 26.3
Nitab4.5_0013176g0010 Nicotiana tabacum HOM05D005977 ORTHO05D007546 1.9e-15 87.8 369 23.8
Nitab4.5_0006794g0010 Nicotiana tabacum HOM05D005977 ORTHO05D007546 2.5e-15 87.4 369 24.1
Pp3c9_20960 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.2e-14 85.1 273 25.3
PGSC0003DMG400017736 Solanum tuberosum HOM05D005977 ORTHO05D007546 1.2e-14 85.1 370 23.2
Mapoly0055s0081 Marchantia polymorpha HOM05D003005 ORTHO05D004939 2.1e-14 84.3 371 25.1
Aa31LG7G9860 Aethionema arabicum HOM05D002809 ORTHO05D004563 4.6e-14 83.2 326 25.2
Solyc02g081670.1 Solanum lycopersicum HOM05D005977 ORTHO05D007546 7.9e-14 82.4 368 23.6
Sopen02g026280 Solanum pennellii HOM05D005977 ORTHO05D007546 7.9e-14 82.4 368 23.6
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 1.0e-13 82.0 371 23.2
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.0e-13 82.0 349 24.9
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 1.4e-13 81.6 362 24.3
SalBow8G5618 Salvia bowleyana HOM05D005977 ORTHO05D007546 1.8e-13 81.3 391 24.0
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 2.3e-13 80.9 365 25.2
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.0e-13 80.5 312 25.6
THA.LOC104798568 Tarenaya hassleriana HOM05D005977 ORTHO05D007546 3.0e-13 80.5 378 23.3
FAN25G0244 Fragaria x ananassa HOM05D005977 ORTHO05D007546 3.9e-13 80.1 376 25.3
Peaxi162Scf00048g00175 Petunia axillaris HOM05D005977 ORTHO05D007546 3.9e-13 80.1 368 25.0
SHI24793 Sapria himalayana HOM05D005977 ORTHO05D007546 3.9e-13 80.1 374 24.3
FvH4_3g12960 Fragaria vesca HOM05D005977 ORTHO05D007546 6.7e-13 79.3 377 25.2
FAN11G3762 Fragaria x ananassa HOM05D005977 ORTHO05D007546 6.7e-13 79.3 377 25.2
FAN21G3750 Fragaria x ananassa HOM05D005977 ORTHO05D007546 8.8e-13 79.0 380 25.0
CiPaw.10G105300 Carya illinoinensis HOM05D005977 ORTHO05D007546 2.0e-12 77.8 376 25.0
FAN16G0144 Fragaria x ananassa HOM05D005977 ORTHO05D007546 2.0e-12 77.8 377 24.9
FvH4_2g33130 Fragaria vesca HOM05D007423 ORTHO05D009091 2.5e-12 77.4 330 24.2
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.5e-12 77.4 279 26.9
Aa31LG9G16240 Aethionema arabicum HOM05D005977 ORTHO05D007546 7.4e-12 75.9 380 22.1
FAN15G1020 Fragaria x ananassa HOM05D007423 ORTHO05D009091 2.2e-11 74.3 341 25.5
FAN24G2841 Fragaria x ananassa HOM05D007423 ORTHO05D009091 2.2e-11 74.3 332 24.7
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.7e-11 73.6 354 23.4
ECA232G4918 Erigeron canadensis HOM05D005977 ORTHO05D007546 4.8e-11 73.2 388 24.7
unitig_37.g12047 Utricularia gibba HOM05D005977 ORTHO05D007546 6.3e-11 72.8 288 24.0
Zm00001eb364210 Zea mays HOM05D002809 ORTHO05D004563 8.2e-11 72.4 325 23.4
Gohir.A05G209900 Gossypium hirsutum HOM05D007423 ORTHO05D009091 1.4e-10 71.6 357 23.2
RcHm_v2.0_Chr6g0309541 Rosa chinensis HOM05D007423 ORTHO05D009091 2.4e-10 70.9 339 24.2
Ah.04g164550 Amaranthus hybridus HOM05D005977 ORTHO05D007546 3.1e-10 70.5 408 22.3
Gorai.009G219800 Gossypium raimondii HOM05D007423 ORTHO05D009091 4.1e-10 70.1 357 24.6
Oeu056060.1 Olea europaea HOM05D005977 ORTHO05D007546 4.1e-10 70.1 360 21.9
Lsat_1_v5_gn_8_106861 Lactuca sativa HOM05D005977 ORTHO05D007546 5.3e-10 69.7 382 24.3
Mapoly0005s0092 Marchantia polymorpha HOM05D007753 ORTHO05D009385 5.3e-10 69.7 254 26.8
HanXRQChr09g0257841 Helianthus annuus HOM05D005977 ORTHO05D007546 6.9e-10 69.3 386 25.4
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 9.1e-10 68.9 344 24.4
Gohir.D05G213200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 1.2e-09 68.6 357 24.6
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.5e-09 68.2 96 42.7
Lsat_1_v5_gn_8_106881 Lactuca sativa HOM05D005977 ORTHO05D007546 1.5e-09 68.2 381 23.1
Pp3c10_19850 Physcomitrium patens HOM05D030659 ORTHO05D009385 2.0e-09 67.8 420 22.4
Lj5g0013479 Lotus japonicus HOM05D007423 ORTHO05D009091 2.6e-09 67.4 335 26.0
Sabra02G0093200 Salix brachista HOM05D007423 ORTHO05D009091 2.6e-09 67.4 331 24.8
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 2.6e-09 67.4 363 22.3
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 5.9e-09 66.2 337 24.0
Pp3c3_33090 Physcomitrium patens HOM05D030659 ORTHO05D009385 5.9e-09 66.2 339 23.0
Cc10_g05770 Coffea canephora HOM05D007423 ORTHO05D009091 2.2e-08 64.3 340 22.9
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 3.8e-08 63.5 332 26.5
AUR62036157 Chenopodium quinoa HOM05D005977 ORTHO05D007546 5.0e-08 63.2 330 23.0
Pp3c14_15830 Physcomitrium patens HOM05D002809 ORTHO05D009385 5.0e-08 63.2 355 22.3
Mapoly0025s0090 Marchantia polymorpha HOM05D002809 ORTHO05D004563 6.5e-08 62.8 337 23.7
HanXRQChr05g0150951 Helianthus annuus HOM05D007423 ORTHO05D009091 4.2e-07 60.1 354 23.7
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 7.2e-07 59.3 81 39.5
BcaNung00809 Brassica carinata HOM05D001487 ORTHO05D001365 9.4e-07 58.9 127 32.3
Haze_22440 Corylus avellana HOM05D007423 ORTHO05D009091 9.4e-07 58.9 326 24.5
QL12p038053 Quercus lobata HOM05D007423 ORTHO05D009091 9.4e-07 58.9 325 24.6
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 9.4e-07 58.9 249 25.7
AUR62019478 Chenopodium quinoa HOM05D005977 ORTHO05D007546 1.2e-06 58.5 292 22.6
BraA03t14399Z Brassica rapa HOM05D001487 ORTHO05D001365 1.6e-06 58.2 129 31.8
CiPaw.07G175100 Carya illinoinensis HOM05D007423 ORTHO05D009091 2.7e-06 57.4 331 23.3
Thhalv10027492m.g Eutrema salsugineum HOM05D001487 ORTHO05D001365 2.7e-06 57.4 161 29.8
Carub.0006s2739 Capsella rubella HOM05D001487 ORTHO05D001365 3.6e-06 57.0 128 29.7
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 3.6e-06 57.0 342 21.6
TWI56G0135 Tripterygium wilfordii HOM05D007423 ORTHO05D009091 3.6e-06 57.0 335 23.6
MELO3C010807.2 Cucumis melo HOM05D007423 ORTHO05D009091 6.1e-06 56.2 364 23.1
Ciclev10001602m.g Citrus clementina HOM05D007423 ORTHO05D009091 7.9e-06 55.8 344 25.0
CsaV3_2G026150 Cucumis sativus L. HOM05D007423 ORTHO05D009091 7.9e-06 55.8 371 23.2
MD01G1073800 Malus domestica HOM05D003005 ORTHO05D004170 7.9e-06 55.8 360 22.5


User provided reference genes

Program Settings