Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 1.6e-74 282.7 145 100.0
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 1.5e-72 276.2 145 97.2
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.2e-71 273.1 145 95.9
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 1.6e-71 272.7 145 95.2
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 5.2e-70 267.7 145 93.8
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 5.2e-70 267.7 145 93.8
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 1.2e-69 266.5 149 92.6
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 4.9e-68 261.2 145 92.4
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 4.9e-68 261.2 145 91.0
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 8.3e-68 260.4 145 91.0
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 8.3e-68 260.4 145 91.0
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 1.4e-67 259.6 145 89.0
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 3.2e-67 258.5 145 90.3
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 4.1e-67 258.1 145 89.0
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 5.4e-67 257.7 145 90.3
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 1.2e-66 256.5 145 89.7
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 89.7
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 1.6e-66 256.1 145 89.7
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 3.5e-66 255.0 145 88.3
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 7.8e-66 253.8 145 89.0
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 7.8e-66 253.8 148 89.2
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 1.0e-65 253.4 145 87.6
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.3e-65 253.1 147 87.1
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.3e-65 253.1 145 89.0
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.7e-65 252.7 144 88.2
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 3.9e-65 251.5 145 87.6
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 5.0e-65 251.1 145 85.5
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.6e-65 250.8 146 87.0
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.6e-65 250.8 146 87.0
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 6.6e-65 250.8 145 89.0
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 8.6e-65 250.4 146 87.0
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 1.5e-64 249.6 145 84.8
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.5e-64 249.6 145 87.6
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.5e-64 249.6 146 88.4
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.5e-64 249.6 145 87.6
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 1.9e-64 249.2 145 86.2
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 1.9e-64 249.2 145 84.8
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.9e-64 249.2 145 87.6
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.5e-64 248.8 145 86.2
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 2.5e-64 248.8 138 89.9
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 86.2
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.3e-64 248.4 145 86.9
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 5.6e-64 247.7 145 86.2
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 7.3e-64 247.3 145 84.1
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 7.3e-64 247.3 146 87.7
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.6e-63 246.1 145 86.2
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 84.8
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.1e-63 245.7 145 84.8
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 2.8e-63 245.4 145 85.5
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 84.1
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.6e-63 245.0 145 84.8
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 6.2e-63 244.2 144 84.7
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 6.2e-63 244.2 146 84.2
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 8.1e-63 243.8 146 84.2
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.1e-62 243.4 146 84.9
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.4e-62 243.0 146 86.3
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 1.8e-62 242.7 145 85.5
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.8e-62 242.7 146 86.3
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.8e-62 242.7 146 86.3
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.8e-62 242.7 146 87.7
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.8e-62 242.7 145 84.8
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 2.3e-62 242.3 145 84.8
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 85.6
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 86.3
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.3e-62 242.3 146 86.3
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.3e-62 242.3 145 86.9
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 2.3e-62 242.3 145 86.9
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 2.3e-62 242.3 145 85.5
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 3.1e-62 241.9 146 84.9
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 83.4
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 3.1e-62 241.9 145 84.1
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.1e-62 241.9 146 84.2
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 82.8
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 4.0e-62 241.5 145 82.8
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 86.3
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 85.6
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 84.2
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 6.8e-62 240.7 145 84.1
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 6.8e-62 240.7 145 82.1
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.2e-61 240.0 145 83.4
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 3.4e-61 238.4 145 83.4
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 5.8e-61 237.7 145 83.4
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.8e-61 237.7 145 83.4
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 82.2
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 9.9e-61 236.9 145 82.8
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 9.9e-61 236.9 145 82.8
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 83.6
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 82.2
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 2.9e-60 235.3 145 81.4
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 3.7e-60 235.0 145 83.4
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 4.9e-60 234.6 145 82.1
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 4.9e-60 234.6 137 87.6
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 6.4e-60 234.2 146 81.5
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 80.8
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 8.3e-60 233.8 145 80.0
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 80.8
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 8.3e-60 233.8 146 80.8
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.1e-59 233.4 146 81.5
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 81.5
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 80.8
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 80.8
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 81.5
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.1
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.2e-59 231.9 142 81.0
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 3.2e-59 231.9 145 79.3
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.8
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 4.1e-59 231.5 146 81.5
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 4.1e-59 231.5 143 84.6
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 7.1e-59 230.7 145 80.7
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 9.2e-59 230.3 145 79.3
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 80.1
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 79.5
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 2.1e-58 229.2 145 79.3
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 79.5
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 79.5
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 80.1
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 80.1
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 79.5
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.1
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 79.5
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 81.5
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 80.8
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 79.5
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 4.6e-58 228.0 147 82.3
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 1.3e-57 226.5 145 80.7
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.3e-57 225.7 145 79.3
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.9e-57 224.9 145 78.6
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 78.1
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 77.4
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 8.6e-57 223.8 145 80.7
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 8.6e-57 223.8 146 79.5
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 78.1
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.2e-55 219.9 146 76.0
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.2e-55 219.9 146 81.5
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 2.1e-55 219.2 144 77.8
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 3.6e-55 218.4 145 77.2
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 6.2e-55 217.6 136 79.4
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 5.2e-54 214.5 146 79.5
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 1.2e-53 213.4 147 76.9
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 9.9e-53 210.3 143 74.1
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 1.7e-52 209.5 146 76.0
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 3.8e-52 208.4 129 81.4
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 6.4e-52 207.6 147 77.6
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 2.4e-51 205.7 103 96.1
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.3e-49 199.9 145 73.1
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.4e-46 189.1 103 86.4
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 4.4e-45 184.9 147 66.7
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-44 183.3 102 85.3
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 5.3e-38 161.4 136 56.6
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 9.0e-38 160.6 136 67.6
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.2e-37 160.2 136 57.4
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 2.6e-37 159.1 98 83.7
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 2.7e-34 149.1 150 57.3
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 6.0e-34 147.9 85 87.1
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 2.3e-33 146.0 142 55.6
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 6.7e-33 144.4 145 59.3
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 8.7e-33 144.1 145 59.3
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 2.8e-31 139.0 85 81.2
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 1.5e-29 133.3 146 58.9
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 5.5e-27 124.8 85 74.1
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 2.1e-23 112.8 79 70.9
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 4.8e-23 111.7 60 91.7
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 4.9e-20 101.7 74 71.6
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 7.1e-19 97.8 74 71.6
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 5.1e-17 91.7 126 42.1
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 2.9e-12 75.9 142 40.8
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 8.5e-12 74.3 126 45.2
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 1.4e-11 73.6 99 39.4
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 4.6e-10 68.6 33 93.9


User provided reference genes

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