Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.5e-107 392.1 196 100.0
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.3e-100 369.8 196 92.9
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.6e-90 335.1 196 84.2
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 9.5e-83 310.5 196 78.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 6.1e-82 307.8 196 76.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.0e-81 307.0 196 77.6
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 3.0e-81 305.4 196 77.0
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.8e-80 301.2 191 79.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 9.8e-80 300.4 196 77.6
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.1e-78 297.0 195 73.8
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.9e-78 296.2 196 74.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 4.1e-78 295.0 195 74.4
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.9e-76 288.5 195 74.4
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.5e-75 285.8 195 74.4
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 4.3e-75 285.0 196 72.4
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.2e-74 283.5 196 72.4
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.2e-74 283.5 196 73.5
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.2e-74 283.5 197 71.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.1e-73 280.4 196 71.9
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.4e-73 280.0 196 70.9
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 2.3e-73 279.3 192 69.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 5.2e-73 278.1 197 69.0
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 5.2e-73 278.1 195 70.3
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.2e-73 278.1 196 70.4
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 6.8e-73 277.7 196 71.4
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.2e-72 276.9 197 70.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.5e-72 276.6 195 70.8
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.0e-72 276.2 196 69.4
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.0e-72 276.2 196 70.9
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.6e-72 275.8 196 66.8
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 3.4e-72 275.4 196 69.4
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.4e-72 275.4 196 69.4
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 5.8e-72 274.6 196 70.4
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 5.8e-72 274.6 193 70.5
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 7.5e-72 274.2 196 70.9
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 7.5e-72 274.2 190 71.1
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 7.5e-72 274.2 197 69.5
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 9.8e-72 273.9 191 71.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 9.8e-72 273.9 194 70.6
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 9.8e-72 273.9 194 71.1
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 1.3e-71 273.5 197 69.0
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.3e-71 273.5 197 70.1
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.7e-71 273.1 192 71.4
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.7e-71 273.1 190 70.0
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 2.2e-71 272.7 196 69.9
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.2e-71 272.7 186 75.3
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 2.9e-71 272.3 197 69.0
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 3.7e-71 271.9 190 72.1
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.4e-70 269.2 196 70.4
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 2.4e-70 269.2 189 68.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.4e-70 269.2 189 69.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.2e-70 268.9 198 69.2
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 3.2e-70 268.9 191 70.2
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 3.2e-70 268.9 194 70.6
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 3.2e-70 268.9 189 68.8
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 5.4e-70 268.1 189 68.3
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 7.0e-70 267.7 195 68.7
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.1e-69 266.2 191 70.2
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 2.7e-69 265.8 198 68.2
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.7e-69 265.8 196 68.4
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 3.5e-69 265.4 170 75.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.5e-69 265.4 186 72.0
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.0e-69 264.6 189 70.4
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 7.8e-69 264.2 186 69.9
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.3e-68 263.5 190 68.9
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.3e-68 263.5 183 72.1
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.3e-68 262.7 206 67.0
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 3.0e-68 262.3 170 74.7
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.0e-68 262.3 190 71.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 5.0e-68 261.5 196 67.3
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.5e-67 260.0 208 65.4
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.9e-67 259.6 191 66.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.3e-67 258.5 190 66.8
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 7.3e-67 257.7 186 68.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 1.6e-66 256.5 166 75.9
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 4.7e-66 255.0 194 67.5
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.2e-66 254.6 189 67.7
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 8.1e-66 254.2 188 67.0
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.3e-65 252.7 186 67.2
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.3e-65 252.7 188 65.4
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.3e-65 252.7 170 72.9
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 8.9e-65 250.8 176 69.3
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 2.0e-64 249.6 189 66.7
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.4e-64 248.8 188 65.4
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 7.5e-64 247.7 163 73.6
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.9e-63 245.0 172 70.3
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 8.3e-63 244.2 175 70.9
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.4e-62 243.4 177 70.1
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 2.4e-62 242.7 166 72.9
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.1e-62 241.9 188 64.9
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 5.4e-62 241.5 176 68.2
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 7.1e-62 241.1 170 72.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.2e-61 240.4 169 72.2
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-61 240.4 196 62.2
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.6e-61 240.0 177 68.4
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 2.1e-61 239.6 192 59.9
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.1e-61 239.6 180 68.9
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 4.6e-61 238.4 193 59.6
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.0e-60 237.3 169 68.6
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 1.3e-60 236.9 167 68.3
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.6e-60 234.2 191 65.4
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 8.6e-60 234.2 166 69.9
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.5e-59 233.4 170 70.6
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.5e-59 233.4 185 62.7
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.3e-59 231.9 177 66.1
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 3.6e-58 228.8 170 67.1
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 3.6e-58 228.8 192 57.8
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.2e-58 228.0 170 67.6
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 6.2e-58 228.0 164 70.7
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.1e-57 227.3 196 59.2
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.8e-57 226.5 169 68.0
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 4.0e-57 225.3 193 59.6
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.2e-56 223.8 142 78.2
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.5e-56 223.4 142 77.5
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 5.8e-56 221.5 186 61.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.7e-55 219.9 189 56.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.2e-55 219.5 170 65.9
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.5e-53 212.2 189 60.3
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 4.6e-53 211.8 196 57.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 7.8e-53 211.1 192 58.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 1.1e-49 200.7 187 52.9
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-49 200.3 190 57.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.5e-48 196.8 189 53.4
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.4e-46 190.3 189 52.4
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 7.8e-45 184.5 113 80.5
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.0e-44 184.1 125 73.6
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.1e-43 180.6 118 74.6
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.9e-43 179.9 133 66.9
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 8.1e-42 174.5 190 52.1
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 5.4e-38 161.8 133 61.7
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.2e-37 160.6 193 45.1
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.1e-37 159.8 170 53.5
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.9e-35 153.3 170 51.8
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 3.3e-19 99.4 135 45.2
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 9.0e-17 91.3 59 69.5
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 6.1e-13 78.6 61 67.2
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 9.7e-11 71.2 167 35.9
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.7e-10 70.5 51 64.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 3.4e-08 62.8 174 29.3
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 4.5e-08 62.4 56 53.6
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.9e-08 62.0 171 28.1
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 7.7e-08 61.6 173 28.3
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.0e-07 61.2 172 26.7
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.3e-07 60.8 171 27.5
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.7e-07 60.5 174 28.2
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.8e-07 59.3 188 28.7
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 5.0e-07 58.9 175 27.4
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 5.0e-07 58.9 174 29.3
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.1e-06 57.8 174 27.6
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.4e-06 57.4 171 25.7
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 9.4e-06 54.7 178 29.2


User provided reference genes

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