Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.4e-53 212.6 102 100.0
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 3.8e-51 204.5 102 95.1
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 6.5e-51 203.8 102 95.1
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.6e-49 198.0 102 92.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 5.2e-48 194.1 96 94.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 4.1e-45 184.5 100 85.0
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-44 182.2 96 88.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-44 182.2 101 87.1
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-44 182.2 96 88.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 4.5e-44 181.0 100 83.0
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.2e-43 178.7 98 85.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.2e-43 178.7 98 85.7
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 8.5e-43 176.8 100 81.0
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 4.7e-41 171.0 100 79.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 6.1e-41 170.6 91 85.7
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 6.7e-40 167.2 97 78.4
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 7.5e-39 163.7 97 76.3
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.3e-38 162.9 97 76.3
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 1.7e-38 162.5 97 78.4
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.8e-38 161.8 98 74.5
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.8e-38 161.8 97 76.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 3.1e-37 158.3 97 73.2
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 4.1e-37 157.9 98 73.5
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 9.1e-37 156.8 90 82.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.6e-36 156.0 98 72.4
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.6e-36 156.0 97 74.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.0e-36 155.6 97 74.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 2.7e-36 155.2 97 72.2
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.7e-36 155.2 95 75.8
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.5e-36 154.8 90 81.1
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 3.5e-36 154.8 90 81.1
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.5e-36 154.5 95 74.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 5.9e-36 154.1 94 74.5
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.3e-35 152.9 95 74.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.2e-35 152.1 97 73.2
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 3.8e-35 151.4 97 72.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 5.0e-35 151.0 98 71.4
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 8.5e-35 150.2 100 73.0
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 8.5e-35 150.2 95 73.7
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.1e-34 149.8 79 83.5
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.5e-34 149.4 78 83.3
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.5e-34 149.4 96 71.9
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.9e-34 149.1 78 83.3
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.5e-34 148.7 99 69.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.2e-34 148.3 94 72.3
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.2e-34 148.3 85 78.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 4.2e-34 147.9 80 78.8
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 4.2e-34 147.9 92 73.9
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.2e-34 147.9 85 78.8
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 5.5e-34 147.5 85 78.8
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 5.5e-34 147.5 94 71.3
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.2e-33 146.4 80 77.5
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.2e-33 146.4 96 69.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.2e-33 146.4 119 62.2
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.2e-33 146.4 86 77.9
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.2e-33 146.4 86 77.9
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.2e-33 146.4 86 77.9
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.2e-33 146.4 79 82.3
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.6e-33 146.0 97 67.0
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.6e-33 146.0 97 67.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.6e-33 146.0 79 81.0
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.1e-33 145.6 93 73.1
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.1e-33 145.6 84 77.4
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 2.7e-33 145.2 97 69.1
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.7e-33 145.2 85 76.5
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 4.7e-33 144.4 85 77.6
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 4.7e-33 144.4 81 76.5
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 6.1e-33 144.1 90 74.4
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 6.1e-33 144.1 97 68.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 6.1e-33 144.1 92 71.7
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 6.1e-33 144.1 99 68.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 8.0e-33 143.7 96 67.7
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 8.0e-33 143.7 100 68.0
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.4e-32 142.9 116 61.2
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.8e-32 142.5 97 66.0
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.3e-32 142.1 94 68.1
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.3e-32 142.1 100 67.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 5.2e-32 141.0 96 66.7
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.5e-31 139.4 97 68.0
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.4e-31 138.3 78 76.9
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 3.4e-31 138.3 87 73.6
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.7e-31 137.5 83 71.1
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.5e-31 137.1 78 76.9
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 7.5e-31 137.1 78 76.9
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 7.5e-31 137.1 78 76.9
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.3e-30 136.3 80 75.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.3e-30 136.3 80 75.0
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.3e-30 136.3 78 75.6
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.7e-30 136.0 96 64.6
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.7e-30 136.0 96 64.6
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.7e-30 136.0 97 69.1
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.7e-30 136.0 78 75.6
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.2e-30 135.6 85 77.6
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.8e-30 135.2 97 64.9
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.3e-30 133.7 86 69.8
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-29 133.3 78 74.4
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-29 133.3 78 74.4
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-29 132.9 78 73.1
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 3.1e-29 131.7 79 72.2
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 3.1e-29 131.7 79 72.2
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 7.0e-29 130.6 76 75.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.2e-28 129.8 65 89.2
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.2e-28 129.8 96 62.5
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.5e-28 128.3 68 85.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 4.5e-28 127.9 65 84.6
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.7e-27 125.9 65 84.6
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 3.8e-27 124.8 75 70.7
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 3.8e-27 124.8 86 65.1
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 3.8e-27 124.8 75 70.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.1e-26 123.2 85 68.2
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 2.8e-25 118.6 82 63.4
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 6.1e-25 117.5 82 63.4
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 6.8e-24 114.0 63 77.8
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 6.8e-24 114.0 70 74.3
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 4.4e-23 111.3 63 76.2
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.7e-22 109.4 90 60.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 6.3e-22 107.5 62 75.8
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 8.3e-22 107.1 76 60.5
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-21 106.7 82 62.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 7.0e-21 104.0 65 67.7
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 7.0e-21 104.0 82 58.5
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.6e-20 102.8 53 79.2
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 2.9e-19 98.6 52 82.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 5.0e-19 97.8 63 66.7
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.5e-18 96.3 64 65.6
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 5.2e-16 87.8 59 66.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 5.8e-15 84.3 58 60.3
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.2e-14 82.4 54 70.4
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.9e-14 82.0 85 47.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.1e-13 80.1 73 52.1
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 3.2e-13 78.6 80 47.5
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 9.2e-13 77.0 46 71.7
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 1.6e-12 76.3 80 50.0
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.0e-12 75.9 46 71.7
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 3.9e-11 71.6 32 93.8
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.4e-08 63.2 64 45.3


User provided reference genes

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