Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 2.0e-27 125.2 70 100.0
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.7e-13 79.0 47 89.4
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.7e-13 79.0 47 89.4
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.7e-13 79.0 47 89.4
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.7e-13 79.0 47 89.4
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.1e-12 76.3 47 85.1
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 1.1e-12 76.3 47 85.1
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 1.1e-12 76.3 47 85.1
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 1.4e-12 75.9 47 85.1
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 83.0
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.4e-12 75.9 47 85.1
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.8e-12 75.5 47 85.1
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 2.4e-12 75.1 47 83.0
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 2.4e-12 75.1 47 83.0
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 3.1e-12 74.7 47 83.0
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 3.1e-12 74.7 47 83.0
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 3.1e-12 74.7 47 83.0
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 4.1e-12 74.3 47 83.0
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 80.9
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 5.3e-12 73.9 47 83.0
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 7.0e-12 73.6 47 80.9
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 80.9
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 80.9
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 80.9
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 80.9
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 80.9
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 78.7
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 83.0
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 80.9
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 9.1e-12 73.2 47 78.7
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.2e-11 72.8 47 80.9
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 1.2e-11 72.8 47 78.7
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 1.2e-11 72.8 47 78.7
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 1.2e-11 72.8 47 80.9
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 2.0e-11 72.0 47 78.7
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 2.0e-11 72.0 47 78.7
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 2.0e-11 72.0 47 78.7
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 2.0e-11 72.0 47 80.9
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 2.0e-11 72.0 47 80.9
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.0e-11 72.0 47 78.7
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 2.6e-11 71.6 47 78.7
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 3.5e-11 71.2 45 82.2
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 3.5e-11 71.2 47 78.7
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.5e-11 71.2 47 76.6
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.5e-11 71.2 47 76.6
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 4.5e-11 70.9 47 78.7
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 7.7e-11 70.1 47 78.7
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 7.7e-11 70.1 47 78.7
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.7e-10 68.9 47 76.6
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 1.7e-10 68.9 47 76.6
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.2e-10 68.6 47 76.6
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 2.9e-10 68.2 47 74.5
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 2.9e-10 68.2 47 74.5
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 2.9e-10 68.2 46 78.3
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 2.9e-10 68.2 47 72.3
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.9e-09 65.5 47 72.3
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 2.5e-09 65.1 44 77.3
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 2.7e-08 61.6 45 68.9
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 4.0e-07 57.8 47 72.3
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 1.5e-06 55.8 40 70.0


User provided reference genes

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