Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 0.0e+00 1287.7 650 100.0
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 0.0e+00 1186.8 658 91.8
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 0.0e+00 1142.9 655 88.1
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 0.0e+00 1141.3 659 88.0
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 0.0e+00 1105.9 660 85.3
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 0.0e+00 1097.4 656 84.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 0.0e+00 1078.9 658 83.0
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 0.0e+00 1076.6 657 83.9
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.9e-306 1054.7 661 80.8
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 3.9e-290 1001.1 614 82.2
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 8.6e-282 973.4 656 74.4
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 3.1e-279 964.9 656 74.2
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.2e-278 963.0 652 73.9
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 2.0e-278 962.2 656 73.6
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.6e-278 961.8 650 74.3
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 3.4e-278 961.4 656 73.8
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 3.8e-277 958.0 661 72.5
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 6.4e-277 957.2 656 73.5
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 6.4e-277 957.2 656 73.2
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 3.0e-274 948.3 650 73.1
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.5e-273 946.0 650 73.1
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.9e-273 945.7 651 73.6
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.9e-273 945.7 654 74.0
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.3e-273 944.9 644 73.3
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 3.3e-273 944.9 644 73.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 9.6e-273 943.3 650 73.1
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 4.0e-271 937.9 647 72.8
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.9e-270 933.3 650 72.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.3e-269 932.9 657 70.3
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.9e-269 931.8 659 70.9
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.4e-268 928.7 658 71.6
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 9.3e-268 926.8 655 71.0
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.6e-267 926.0 658 71.1
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 6.0e-267 924.1 652 71.5
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 6.6e-266 920.6 659 69.8
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.5e-265 919.5 647 70.5
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.5e-265 918.7 644 72.5
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.2e-261 905.6 650 69.8
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.9e-261 905.2 657 69.9
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 4.9e-261 904.4 648 70.1
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 8.4e-261 903.7 657 69.1
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 4.6e-259 897.9 650 68.8
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 6.0e-259 897.5 648 68.2
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.3e-258 895.6 655 69.6
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 7.4e-257 890.6 649 69.0
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 9.0e-255 883.6 664 67.3
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.7e-253 879.4 612 71.6
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 8.4e-253 877.1 644 69.3
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.9e-252 875.9 663 67.0
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 4.2e-252 874.8 651 67.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.9e-250 868.2 665 66.5
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.9e-249 865.9 641 67.9
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.3e-249 864.8 581 74.4
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 5.6e-249 864.4 650 68.2
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 6.9e-247 857.4 647 67.2
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 2.0e-246 855.9 647 67.1
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.2e-245 852.4 658 65.8
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 8.4e-245 850.5 654 66.2
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.4e-244 849.7 650 65.4
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.5e-244 849.0 649 66.7
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 1.9e-241 839.3 644 65.8
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 1.9e-241 839.3 644 65.8
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 4.3e-241 838.2 653 65.1
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.2e-240 835.9 663 65.5
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 3.7e-240 835.1 651 64.2
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 4.1e-239 831.6 662 64.2
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 1.2e-238 830.1 648 65.4
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 4.5e-238 828.2 659 64.5
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 5.9e-238 827.8 668 63.8
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.7e-237 826.2 648 64.7
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 4.2e-236 821.6 648 64.5
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 5.5e-236 821.2 648 64.4
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 7.2e-236 820.8 644 64.4
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 4.6e-235 818.1 648 64.0
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 4.1e-231 805.1 648 63.4
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.7e-229 799.7 639 63.2
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 3.2e-228 795.4 640 63.4
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 1.6e-227 793.1 651 63.0
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.1e-227 792.7 661 63.4
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 2.3e-226 789.3 647 62.4
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 2.3e-226 789.3 645 62.9
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 3.7e-224 781.9 658 62.8
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.7e-224 781.9 652 61.5
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.1e-223 780.4 647 62.1
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.5e-222 776.5 649 61.6
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 6.3e-216 754.6 686 60.5
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 2.1e-211 739.6 562 66.4
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 4.0e-210 735.3 652 61.0
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.7e-205 719.9 524 68.9
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 1.8e-199 699.9 657 58.1
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.0e-197 694.1 546 64.1
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.8e-195 686.0 653 57.1
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.0e-189 667.5 618 59.5
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.3e-189 667.2 646 58.5
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.1e-188 664.1 682 55.3
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.2e-179 634.0 626 55.1
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.2e-163 580.9 579 54.9
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 3.1e-162 576.2 441 65.8
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.7e-157 560.5 656 48.9
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.7e-157 560.5 651 48.2
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 5.6e-156 555.4 642 47.2
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 1.2e-150 537.7 588 47.1
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.6e-150 537.3 492 57.7
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.4e-143 514.2 654 43.3
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 2.6e-121 440.3 627 39.2
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-103 381.3 332 63.0
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.1e-90 335.5 227 71.8
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.5e-60 238.4 131 91.6
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 9.2e-58 229.2 296 44.6
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 4.1e-50 203.8 107 92.5
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 3.5e-49 200.7 107 91.6
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 7.8e-49 199.5 146 67.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 5.1e-48 196.8 124 74.2
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 2.2e-43 181.4 287 41.8
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 8.4e-43 179.5 156 57.1
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 4.3e-39 167.2 110 75.5
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 7.3e-39 166.4 188 52.7
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.1e-37 162.5 86 91.9
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 1.8e-37 161.8 101 79.2
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 8.4e-35 152.9 94 77.7
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.4e-34 152.1 155 50.3
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.4e-34 150.2 99 73.7
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.4e-34 150.2 155 51.6
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.0e-32 146.0 218 38.5
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 3.0e-32 144.4 160 49.4
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 8.1e-30 136.3 93 74.2
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.4e-29 134.8 91 72.5
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 6.4e-27 126.7 84 73.8
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.7e-19 102.1 56 82.1
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 8.4e-19 99.8 81 61.7
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 7.1e-18 96.7 59 83.1
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.5e-15 89.0 89 53.9
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.8e-13 82.0 473 22.0
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.4e-13 81.6 48 79.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 9.0e-13 79.7 239 27.6


User provided reference genes

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